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DCP2 decapping mRNA 2 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102355675, updated on 6-Jun-2024

Summary

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Gene symbol
DCP2
Gene description
decapping mRNA 2
See related
Ensembl:ENSLACG00000000580
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
human zebrafish all
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Genomic context

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See DCP2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 1 NC_088139.1 (123190387..123245836, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819642.1 (3311..45758)

Chromosome 1 - NC_088139.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135355734 Neighboring gene MCC regulator of WNT signaling pathway Neighboring gene receptor accessory protein 5 Neighboring gene signal recognition particle 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
m7GpppN-mRNA hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088139.1 Reference fLatCha1.pri

    Range
    123190387..123245836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064556623.1 → XP_064412693.1  m7GpppN-mRNA hydrolase isoform X2

    UniProtKB/TrEMBL
    H2ZTC9

  2. XM_064556617.1 → XP_064412687.1  m7GpppN-mRNA hydrolase isoform X1

    UniProtKB/TrEMBL
    H2ZTC9
Nucleotide Protein
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Gene LinkOut

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