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txnl4b thioredoxin-like 4B [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102297824, updated on 10-Mar-2024

Summary

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Gene symbol
txnl4b
Gene description
thioredoxin-like 4B
See related
Ensembl:ENSHBUG00000001602
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582522.1 (566512..570019, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179548.1 (870425..873941)

NW_024582522.1Genomic Context describing neighboring genes Neighboring gene centromere protein Q Neighboring gene mitochondrial ribosomal protein L16 Neighboring gene tRNA methyltransferase 10C, mitochondrial RNase P subunit Neighboring gene basic leucine zipper nuclear factor 1 Neighboring gene excision repair cross-complementation group 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thioredoxin-like protein 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582522.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    566512..570019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005932689.3 → XP_005932751.1  thioredoxin-like protein 4B

    See identical proteins and their annotated locations for XP_005932751.1

    UniProtKB/TrEMBL
    A0A3Q2UST8
    Related
    ENSHBUP00000000447.1
    Conserved Domains (1) summary
    cd02986
    Location:10 → 123
    DLP; Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to ...
Nucleotide Protein
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