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nr1h3 nuclear receptor subfamily 1, group H, member 3 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102221658, updated on 10-Mar-2024

Summary

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Gene symbol
nr1h3
Gene description
nuclear receptor subfamily 1, group H, member 3
See related
Ensembl:ENSXMAG00000000014
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 4 NC_036446.1 (6066416..6083716, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372319.1 (337044..348933, complement)

Chromosome 4 - NC_036446.1Genomic Context describing neighboring genes Neighboring gene fin bud initiation factor b Neighboring gene butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 Neighboring gene MAP-kinase activating death domain Neighboring gene ADP-ribosylation factor-like 14 effector protein Neighboring gene gonadotropin subunit beta-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oxysterols receptor LXR-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036446.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    6066416..6083716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005805532.2 → XP_005805589.1  oxysterols receptor LXR-alpha

    UniProtKB/TrEMBL
    M3ZCS2
    Related
    ENSXMAP00000000014.1, ENSXMAT00000000014.2
    Conserved Domains (2) summary
    cd06954
    Location:227 → 462
    NR_LBD_LXR; The ligand binding domain of Liver X receptors, a family of nuclear receptors of ligand-activated transcription factors
    cd07160
    Location:96 → 196
    NR_DBD_LXR; DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers

  2. XM_023332409.1 → XP_023188177.1  oxysterols receptor LXR-alpha

    UniProtKB/TrEMBL
    M3ZCS2
    Conserved Domains (2) summary
    cd06954
    Location:227 → 462
    NR_LBD_LXR; The ligand binding domain of Liver X receptors, a family of nuclear receptors of ligand-activated transcription factors
    cd07160
    Location:96 → 196
    NR_DBD_LXR; DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers

  3. XM_023332408.1 → XP_023188176.1  oxysterols receptor LXR-alpha

    UniProtKB/TrEMBL
    M3ZCS2
    Related
    ENSXMAP00000039409.1, ENSXMAT00000031728.1
    Conserved Domains (2) summary
    cd06954
    Location:227 → 462
    NR_LBD_LXR; The ligand binding domain of Liver X receptors, a family of nuclear receptors of ligand-activated transcription factors
    cd07160
    Location:96 → 196
    NR_DBD_LXR; DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers
Nucleotide Protein Strain
Heading Accession and Version

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