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nop10 NOP10 ribonucleoprotein homolog (yeast) [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102218477, updated on 10-Mar-2024

Summary

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Gene symbol
nop10
Gene description
NOP10 ribonucleoprotein homolog (yeast)
See related
Ensembl:ENSXMAG00000025055
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See nop10 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 14 NC_036456.1 (6655667..6656858, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372429.1 (391413..392521, complement)

Chromosome 14 - NC_036456.1Genomic Context describing neighboring genes Neighboring gene TOX high mobility group box family member 4 b Neighboring gene solute carrier family 12 member 6 Neighboring gene uncharacterized LOC111611050 Neighboring gene lysophosphatidylcholine acyltransferase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables box H/ACA snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomerase RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of telomerase RNA localization to Cajal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of box H/ACA telomerase RNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
H/ACA ribonucleoprotein complex subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036456.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    6655667..6656858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005809171.3 → XP_005809228.1  H/ACA ribonucleoprotein complex subunit 3

    UniProtKB/TrEMBL
    A0A3B5Q7F2
    Related
    ENSXMAP00000027030.1, ENSXMAT00000038514.1
    Conserved Domains (1) summary
    pfam04135
    Location:4 → 52
    Nop10p; Nucleolar RNA-binding protein, Nop10p family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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