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socs1a suppressor of cytokine signaling 1a [ Pundamilia nyererei ]

Gene ID: 102200314, updated on 10-Mar-2024

Summary

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Gene symbol
socs1a
Gene description
suppressor of cytokine signaling 1a
See related
Ensembl:ENSPNYG00000018968
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Also known as
socs1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187533.1 (796279..798860)

NW_005187533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102199110 Neighboring gene calcium channel, voltage-dependent, gamma subunit 3b Neighboring gene protein kinase C, beta b Neighboring gene C-type lectin domain containing 16A Neighboring gene Dexi homolog (mouse)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187533.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
suppressor of cytokine signaling 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187533.1 Reference PunNye1.0

    Range
    796279..798860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005743509.2 → XP_005743566.1  suppressor of cytokine signaling 1

    See identical proteins and their annotated locations for XP_005743566.1

    UniProtKB/TrEMBL
    A0A3B4GPP8
    Related
    ENSPNYP00000025127.1, ENSPNYT00000025743.1
    Conserved Domains (2) summary
    cd10382
    Location:72 → 169
    SH2_SOCS1; Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins
    cl02533
    Location:175 → 211
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
Nucleotide Protein
Heading Accession and Version

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