U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TMEFF1 transmembrane protein with EGF like and two follistatin like domains 1 [ Sus scrofa (pig) ]

Gene ID: 102166244, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
TMEFF1provided by VGNC
Official Full Name
transmembrane protein with EGF like and two follistatin like domains 1provided by VGNC
Primary source
VGNC:VGNC:112530
See related
Ensembl:ENSSSCG00000005391
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 5.1), heart (RPKM 4.0) and 6 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (242214955..242309878)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (270575117..270670656)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene inversin Neighboring gene testis expressed 10 Neighboring gene Myb/SANT DNA binding domain containing 3 Neighboring gene caveolae associated protein 4 Neighboring gene uncharacterized LOC110255983

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tomoregulin-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    242214955..242309878
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005660298.3 → XP_005660355.1  tomoregulin-1 isoform X1

    UniProtKB/TrEMBL
    A0A287BBI1, A0A4X1VEZ6, A0A8D1ZB22
    Related
    ENSSSCP00000053695.1, ENSSSCT00000059840.3
    Conserved Domains (2) summary
    PHA02887
    Location:273 → 309
    PHA02887; EGF-like protein; Provisional
    smart00280
    Location:97 → 141
    KAZAL; Kazal type serine protease inhibitors

  2. XM_013993712.2 → XP_013849166.1  tomoregulin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8D1ZB22
    Conserved Domains (2) summary
    PHA02887
    Location:222 → 258
    PHA02887; EGF-like protein; Provisional
    smart00280
    Location:46 → 90
    KAZAL; Kazal type serine protease inhibitors
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials