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USP47 ubiquitin specific peptidase 47 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 102126415, updated on 3-Apr-2024

Summary

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Gene symbol
USP47
Gene description
ubiquitin specific peptidase 47
See related
Ensembl:ENSMFAG00000043486
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
30
Annotation release Status Assembly Chr Location
102 current MFA1912RKSv2 (GCF_012559485.2) 14 NC_052268.1 (72170754..72284262)
101 previous assembly Macaca_fascicularis_5.0 (GCF_000364345.1) 14 NC_022285.1 (55795019..55911757, complement)

Chromosome 14 - NC_052268.1Genomic Context describing neighboring genes Neighboring gene activating transcription factor 7-interacting protein 2-like Neighboring gene 40S ribosomal protein S17-like Neighboring gene polypeptide N-acetylgalactosaminyltransferase 18 Neighboring gene dickkopf WNT signaling pathway inhibitor 3 Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cynomolgus monkey testicular cDNAs for discovery of novel human genes in the human genome sequence. Osada N, et al. BMC Genomics, 2002 Dec 23. PMID 12498619, Free PMC Article
  2. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca fascicularis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MFA1912RKSv2 Primary Assembly

Genomic

  1. NC_052268.1 Reference MFA1912RKSv2 Primary Assembly

    Range
    72170754..72284262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045371497.1 → XP_045227432.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X5

    Conserved Domains (2) summary
    cd02659
    Location:86 → 466
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam19718
    Location:1024 → 1263
    USP47_C; Ubiquitin carboxyl-terminal hydrolase 47 C-terminal

  2. XM_045371495.1 → XP_045227430.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X3

  3. XM_015435111.2 → XP_015290597.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X5

    UniProtKB/TrEMBL
    G7PQQ1
    Related
    ENSMFAP00000024154.1
    Conserved Domains (2) summary
    cd02659
    Location:86 → 466
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam19718
    Location:1024 → 1263
    USP47_C; Ubiquitin carboxyl-terminal hydrolase 47 C-terminal

  4. XM_005578605.3 → XP_005578662.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X1

    UniProtKB/TrEMBL
    A0A2K5VHC8, G7PQQ1
    Related
    ENSMFAP00000024118.1
    Conserved Domains (2) summary
    cd02659
    Location:186 → 566
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:187 → 561
    UCH; Ubiquitin carboxyl-terminal hydrolase

  5. XM_005578606.3 → XP_005578663.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X2

    UniProtKB/TrEMBL
    A0A2K5VHD3, A0A2K5VHG9
    Related
    ENSMFAP00000024120.1
    Conserved Domains (2) summary
    cd02659
    Location:166 → 546
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:167 → 541
    UCH; Ubiquitin carboxyl-terminal hydrolase

  6. XM_045371496.1 → XP_045227431.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X4

    UniProtKB/TrEMBL
    A0A2K5VHF4
Nucleotide Protein
Heading Accession and Version

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