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TET1 tet methylcytosine dioxygenase 1 [ Columba livia (rock pigeon) ]

Gene ID: 102089841, updated on 3-Aug-2024

Summary

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Gene symbol
TET1
Gene description
tet methylcytosine dioxygenase 1
Locus tag
A306_12642
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 6 NC_088607.1 (34619853..34685989)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973833.1 (223645..325103, complement)

Chromosome 6 - NC_088607.1Genomic Context describing neighboring genes Neighboring gene DNA replication helicase/nuclease 2 Neighboring gene uncharacterized LOC135579788 Neighboring gene solute carrier family 25 member 16 Neighboring gene uncharacterized LOC135579790 Neighboring gene small nucleolar RNA SNORD98 Neighboring gene cell division cycle and apoptosis regulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5-methylcytosine dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 5-methylcytosine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methylcytosine dioxygenase TET1
Names
Methylcytosine dioxygenase TET1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088607.1 Reference bColLiv1.pat.W.v2

    Range
    34619853..34685989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065067948.1 → XP_064924020.1  methylcytosine dioxygenase TET1 isoform X1

    UniProtKB/TrEMBL
    A0A2I0MFE2

  2. XM_065067951.1 → XP_064924023.1  methylcytosine dioxygenase TET1 isoform X3

    UniProtKB/TrEMBL
    A0A2I0MFE2

  3. XM_065067952.1 → XP_064924024.1  methylcytosine dioxygenase TET1 isoform X4

    UniProtKB/TrEMBL
    A0A2I0MFE2

  4. XM_065067950.1 → XP_064924022.1  methylcytosine dioxygenase TET1 isoform X2

    UniProtKB/TrEMBL
    A0A2I0MFE2

  5. XM_065067953.1 → XP_064924025.1  methylcytosine dioxygenase TET1 isoform X5

    UniProtKB/TrEMBL
    A0A2I0MFE2

  6. XM_065067949.1 → XP_064924021.1  methylcytosine dioxygenase TET1 isoform X1

    UniProtKB/TrEMBL
    A0A2I0MFE2
Nucleotide Protein
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