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prima1 proline rich membrane anchor 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 102082221, updated on 10-Mar-2024

Summary

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Gene symbol
prima1
Gene description
proline rich membrane anchor 1
See related
Ensembl:ENSONIG00000030071
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in brain (RPKM 5.5), eye (RPKM 2.4) and 4 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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See prima1 in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
4
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG19 NC_031983.2 (11453736..11466534)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG19 NC_031983.1 (18345536..18362065, complement)

Linkage Group LG19 - NC_031983.2Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box containing 2 Neighboring gene family with sequence similarity 181 member A Neighboring gene unc-79 homolog, NALCN channel complex subunit Neighboring gene uncharacterized LOC100706410

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
proline-rich membrane anchor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031983.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    11453736..11466534
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005477000.4 → XP_005477057.1  proline-rich membrane anchor 1

    See identical proteins and their annotated locations for XP_005477057.1

    UniProtKB/TrEMBL
    A0A669C843
    Related
    ENSONIP00000042792.1, ENSONIT00000070840.1
    Conserved Domains (1) summary
    pfam16101
    Location:97 → 218
    PRIMA1; Proline-rich membrane anchor 1
Nucleotide Protein
Heading Accession and Version

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