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PALLD palladin, cytoskeletal associated protein [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102062726, updated on 3-Aug-2024

Summary

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Gene symbol
PALLD
Gene description
palladin, cytoskeletal associated protein
See related
Ensembl:ENSZALG00000011052
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081747.1 (331243..516644, complement)

NW_005081747.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113460119 Neighboring gene SH3 domain containing ring finger 1 Neighboring gene carbonyl reductase 4 Neighboring gene uncharacterized LOC102063505 Neighboring gene uncharacterized LOC102063793 Neighboring gene annexin A10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081747 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables axon guidance receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
palladin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081747.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    331243..516644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026797381.1 → XP_026653182.1  palladin isoform X4

    UniProtKB/TrEMBL
    A0A8D2MWX3

  2. XM_026797380.1 → XP_026653181.1  palladin isoform X3

    UniProtKB/TrEMBL
    A0A8D2MTR2, A0A8D2MWX3
    Related
    ENSZALP00000013273.1, ENSZALT00000018099.1

  3. XM_005493911.2 → XP_005493968.1  palladin isoform X2

    UniProtKB/TrEMBL
    A0A8D2MV44, A0A8D2MYN6
    Related
    ENSZALP00000013271.1, ENSZALT00000018097.1
    Conserved Domains (3) summary
    cd00096
    Location:504 → 581
    Ig; Immunoglobulin domain
    cd05893
    Location:1297 → 1371
    Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
    pfam07679
    Location:1181 → 1271
    I-set; Immunoglobulin I-set domain

  4. XM_005493908.2 → XP_005493965.1  palladin isoform X1

    See identical proteins and their annotated locations for XP_005493965.1

    UniProtKB/TrEMBL
    A0A8D2MYN6
    Conserved Domains (3) summary
    cd00096
    Location:504 → 581
    Ig; Immunoglobulin domain
    cd05893
    Location:1314 → 1388
    Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
    pfam07679
    Location:1198 → 1288
    I-set; Immunoglobulin I-set domain

  5. XM_005493909.2 → XP_005493966.1  palladin isoform X1

    See identical proteins and their annotated locations for XP_005493966.1

    UniProtKB/TrEMBL
    A0A8D2MYN6
    Conserved Domains (3) summary
    cd00096
    Location:504 → 581
    Ig; Immunoglobulin domain
    cd05893
    Location:1314 → 1388
    Ig_Palladin_C; C-terminal immunoglobulin (Ig)-like domain of palladin
    pfam07679
    Location:1198 → 1288
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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