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SYNPO2 synaptopodin 2 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102045527, updated on 3-Aug-2024

Summary

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Gene symbol
SYNPO2
Gene description
synaptopodin 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See SYNPO2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054435.1 (60205..139707)

NW_005054435.1Genomic Context describing neighboring genes Neighboring gene SEC24 homolog D, COPII coat complex component Neighboring gene myozenin 2 Neighboring gene ubiquitin specific peptidase 53

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054435 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptopodin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054435.1 Reference GeoFor_1.0

    Range
    60205..139707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031062001.1 → XP_030917861.1  synaptopodin-2 isoform X2

    UniProtKB/TrEMBL
    A0A8N5F0J3
    Conserved Domains (2) summary
    PHA03247
    Location:790 → 1187
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:17 → 93
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_005427043.3 → XP_005427100.2  synaptopodin-2 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HRA5
    Conserved Domains (2) summary
    PHA03247
    Location:790 → 1253
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:17 → 93
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  3. XM_031062002.1 → XP_030917862.1  synaptopodin-2 isoform X3

    UniProtKB/TrEMBL
    A0A8N5EXT9
    Conserved Domains (2) summary
    PHA03247
    Location:599 → 1102
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:17 → 93
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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