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USP13 ubiquitin specific peptidase 13 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102042117, updated on 3-Aug-2024

Summary

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Gene symbol
USP13
Gene description
ubiquitin specific peptidase 13
See related
Ensembl:ENSGFOG00000007465
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054309.1 (5304784..5345791, complement)

NW_005054309.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain 39 molecular ruler complex subunit Neighboring gene tetratricopeptide repeat domain 14 Neighboring gene peroxisomal biogenesis factor 5 like Neighboring gene NADH:ubiquinone oxidoreductase subunit B5 Neighboring gene mitochondrial ribosomal protein L47

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054309 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 13
Names
ubiquitin specific peptidase 13 (isopeptidase T-3)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054309.1 Reference GeoFor_1.0

    Range
    5304784..5345791 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014312334.2 → XP_014167809.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X1

    UniProtKB/TrEMBL
    A0A6I9ZEZ4
    Related
    ENSGFOP00000010747.1, ENSGFOT00000011103.1
    Conserved Domains (2) summary
    COG5207
    Location:1 → 799
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:272 → 796
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_031055410.1 → XP_030911270.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X2

    UniProtKB/TrEMBL
    A0A8N5HWG4
    Related
    ENSGFOP00000010763.1, ENSGFOT00000011119.1
    Conserved Domains (2) summary
    COG5207
    Location:1 → 790
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    cd02658
    Location:272 → 787
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
Nucleotide Protein
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