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CDH13 cadherin 13 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102038694, updated on 3-Aug-2024

Summary

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Gene symbol
CDH13
Gene description
cadherin 13
See related
Ensembl:ENSGFOG00000009065
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054503.1 (55742..502534, complement)

NW_005054503.1Genomic Context describing neighboring genes Neighboring gene arylamine N-acetyltransferase, pineal gland isozyme NAT-10 Neighboring gene M-phase phosphoprotein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054503 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sprouting angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054503.1 Reference GeoFor_1.0

    Range
    55742..502534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005428754.2 → XP_005428811.1  cadherin-13 isoform X2

    UniProtKB/TrEMBL
    A0A6I9HTJ8
    Related
    ENSGFOP00000013214.1, ENSGFOT00000013648.1
    Conserved Domains (3) summary
    cd11304
    Location:488 → 581
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam00028
    Location:600 → 680
    Cadherin; Cadherin domain
    pfam08758
    Location:26 → 112
    Cadherin_pro; Cadherin prodomain like

  2. XM_031063408.1 → XP_030919268.1  cadherin-13 isoform X1

    UniProtKB/TrEMBL
    A0A8N5I2S5
    Conserved Domains (3) summary
    cd11304
    Location:488 → 581
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam00028
    Location:600 → 680
    Cadherin; Cadherin domain
    pfam08758
    Location:26 → 112
    Cadherin_pro; Cadherin prodomain like
Nucleotide Protein
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