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RIOX1 ribosomal oxygenase 1 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102035608, updated on 3-Aug-2024

Summary

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Gene symbol
RIOX1
Gene description
ribosomal oxygenase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054301.1 (18791044..18792153)

NW_005054301.1Genomic Context describing neighboring genes Neighboring gene papilin, proteoglycan like sulfated glycoprotein Neighboring gene NUMB endocytic adaptor protein Neighboring gene putative acyl-coenzyme A thioesterase 6 Neighboring gene acyl-coenzyme A thioesterase 5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054301 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K4 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosomal oxygenase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054301.1 Reference GeoFor_1.0

    Range
    18791044..18792153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031064864.1 → XP_030920724.1  ribosomal oxygenase 1

    UniProtKB/TrEMBL
    A0A8N5I4N3
    Conserved Domains (1) summary
    cl21464
    Location:1 → 231
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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