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PTBP2 polypyrimidine tract binding protein 2 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102033668, updated on 3-Aug-2024

Summary

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Gene symbol
PTBP2
Gene description
polypyrimidine tract binding protein 2
See related
Ensembl:ENSGFOG00000007736
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See PTBP2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054336.1 (4110004..4153115)

NW_005054336.1Genomic Context describing neighboring genes Neighboring gene cytochrome c-type heme lyase Neighboring gene RWD domain containing 3 Neighboring gene dihydropyrimidine dehydrogenase Neighboring gene uncharacterized LOC115947985

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054336 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054336.1 Reference GeoFor_1.0

    Range
    4110004..4153115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005422091.2 → XP_005422148.2  polypyrimidine tract-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HJP1
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 506
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  2. XM_005422089.2 → XP_005422146.1  polypyrimidine tract-binding protein 2 isoform X2

    See identical proteins and their annotated locations for XP_005422146.1

    UniProtKB/TrEMBL
    A0A6I9HIG5
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 505
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  3. XM_014307455.2 → XP_014162930.1  polypyrimidine tract-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6I9ZA21
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 501
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  4. XM_005422090.2 → XP_005422147.1  polypyrimidine tract-binding protein 2 isoform X4

    See identical proteins and their annotated locations for XP_005422147.1

    UniProtKB/TrEMBL
    A0A6I9HJR0
    Related
    ENSGFOP00000011166.1, ENSGFOT00000011536.1
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 500
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
Nucleotide Protein
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