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CDH10 cadherin 10 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102031839, updated on 3-Aug-2024

Summary

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Gene symbol
CDH10
Gene description
cadherin 10
See related
Ensembl:ENSGFOG00000014189
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054359.1 (4234454..4328673)

NW_005054359.1Genomic Context describing neighboring genes Neighboring gene cadherin 9 Neighboring gene uncharacterized LOC115948207

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054359 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054359.1 Reference GeoFor_1.0

    Range
    4234454..4328673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031059283.1 → XP_030915143.1  cadherin-10 isoform X2

    UniProtKB/TrEMBL
    A0A8N5HZD9
    Conserved Domains (3) summary
    cd11304
    Location:164 → 265
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:80 → 158
    CA; Cadherin repeats
    pfam01049
    Location:632 → 779
    Cadherin_C; Cadherin cytoplasmic region

  2. XM_031059279.1 → XP_030915139.1  cadherin-10 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HMA3
    Related
    ENSGFOP00000021366.1, ENSGFOT00000022048.1
    Conserved Domains (3) summary
    cd11304
    Location:164 → 265
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:80 → 158
    CA; Cadherin repeats
    pfam01049
    Location:635 → 782
    Cadherin_C; Cadherin cytoplasmic region

  3. XM_005423857.2 → XP_005423914.1  cadherin-10 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HMA3
    Conserved Domains (3) summary
    cd11304
    Location:164 → 265
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:80 → 158
    CA; Cadherin repeats
    pfam01049
    Location:635 → 782
    Cadherin_C; Cadherin cytoplasmic region

  4. XM_031059281.1 → XP_030915141.1  cadherin-10 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HMA3
    Conserved Domains (3) summary
    cd11304
    Location:164 → 265
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:80 → 158
    CA; Cadherin repeats
    pfam01049
    Location:635 → 782
    Cadherin_C; Cadherin cytoplasmic region

  5. XM_031059280.1 → XP_030915140.1  cadherin-10 isoform X1

    UniProtKB/TrEMBL
    A0A6I9HMA3
    Conserved Domains (3) summary
    cd11304
    Location:164 → 265
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:80 → 158
    CA; Cadherin repeats
    pfam01049
    Location:635 → 782
    Cadherin_C; Cadherin cytoplasmic region
Nucleotide Protein
Heading Accession and Version

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