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RTRAF RNA transcription, translation and transport factor [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102031371, updated on 3-Aug-2024

Summary

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Gene symbol
RTRAF
Gene description
RNA transcription, translation and transport factor
See related
Ensembl:ENSGFOG00000002355
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054303.1 (14444278..14461670, complement)

NW_005054303.1Genomic Context describing neighboring genes Neighboring gene prostaglandin E2 receptor EP2 subtype Neighboring gene nidogen 2 Neighboring gene G protein subunit gamma 2 Neighboring gene FERM domain containing 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054303 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of tRNA-splicing ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA transcription, translation and transport factor protein
Names
UPF0568 protein C14orf166 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054303.1 Reference GeoFor_1.0

    Range
    14444278..14461670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005417974.2 → XP_005418031.1  RNA transcription, translation and transport factor protein

    UniProtKB/TrEMBL
    A0A6I9HDD2
    Related
    ENSGFOP00000003380.1, ENSGFOT00000003461.1
    Conserved Domains (1) summary
    pfam10036
    Location:5 → 243
    RLL; Putative carnitine deficiency-associated protein
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases