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Trps1 transcriptional repressor GATA binding 1 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102028191, updated on 10-Mar-2024

Summary

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Gene symbol
Trps1
Gene description
transcriptional repressor GATA binding 1
See related
Ensembl:ENSCLAG00000010192
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955417.1 (21674545..21913137, complement)

NW_004955417.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106148178 Neighboring gene uncharacterized LOC102027849 Neighboring gene uncharacterized LOC106148180 Neighboring gene uncharacterized LOC106148223

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955417.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor Trps1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955417.1 Reference ChiLan1.0 Primary Assembly

    Range
    21674545..21913137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005381891.2 → XP_005381948.1  zinc finger transcription factor Trps1 isoform X5

    UniProtKB/TrEMBL
    A0A8C2YPZ8
    Conserved Domains (2) summary
    smart00401
    Location:897 → 940
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:901 → 957
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  2. XM_013512791.1 → XP_013368245.1  zinc finger transcription factor Trps1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2YPZ8
    Conserved Domains (2) summary
    smart00401
    Location:908 → 951
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:912 → 968
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  3. XM_005381890.2 → XP_005381947.1  zinc finger transcription factor Trps1 isoform X4

    UniProtKB/TrEMBL
    A0A8C2VMI1, A0A8C2YPZ8
    Related
    ENSCLAP00000014772.1, ENSCLAT00000014931.1
    Conserved Domains (2) summary
    smart00401
    Location:904 → 947
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:908 → 964
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  4. XM_013512789.1 → XP_013368243.1  zinc finger transcription factor Trps1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2YPZ8
    Conserved Domains (2) summary
    smart00401
    Location:915 → 958
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:919 → 975
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  5. XM_005381893.2 → XP_005381950.1  zinc finger transcription factor Trps1 isoform X6

    UniProtKB/TrEMBL
    A0A8C2YPZ8
    Related
    ENSCLAP00000014777.1, ENSCLAT00000014936.1
    Conserved Domains (2) summary
    smart00401
    Location:891 → 934
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:895 → 951
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  6. XM_013512790.1 → XP_013368244.1  zinc finger transcription factor Trps1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2YPZ8
    Conserved Domains (2) summary
    smart00401
    Location:915 → 958
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:919 → 975
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  7. XM_013512792.1 → XP_013368246.1  zinc finger transcription factor Trps1 isoform X3

    UniProtKB/TrEMBL
    A0A8C2YPZ8
    Related
    ENSCLAP00000014774.1, ENSCLAT00000014933.1
    Conserved Domains (2) summary
    smart00401
    Location:906 → 949
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:910 → 966
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  8. XM_013512793.1 → XP_013368247.1  zinc finger transcription factor Trps1 isoform X6

    UniProtKB/TrEMBL
    A0A8C2YPZ8
    Conserved Domains (2) summary
    smart00401
    Location:891 → 934
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:895 → 951
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
Heading Accession and Version

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