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Tom1l1 target of myb1 like 1 membrane trafficking protein [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102019129, updated on 10-Mar-2024

Summary

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Gene symbol
Tom1l1
Gene description
target of myb1 like 1 membrane trafficking protein
See related
Ensembl:ENSCLAG00000012206
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955451.1 (7642679..7690957, complement)

NW_004955451.1Genomic Context describing neighboring genes Neighboring gene HLF transcription factor, PAR bZIP family member Neighboring gene syntaxin binding protein 4 Neighboring gene cytochrome c oxidase assembly protein COX11, mitochondrial Neighboring gene serine/arginine repetitive matrix protein 1 pseudogene Neighboring gene uncharacterized LOC102019974

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955451.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TOM1-like protein 1
Names
target of myb1 (chicken)-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955451.1 Reference ChiLan1.0 Primary Assembly

    Range
    7642679..7690957 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013519382.1 → XP_013374836.1  TOM1-like protein 1

    UniProtKB/TrEMBL
    A0A8C2VMJ4
    Related
    ENSCLAP00000017790.1, ENSCLAT00000017966.1
    Conserved Domains (2) summary
    cd03565
    Location:14 → 154
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14237
    Location:200 → 291
    GAT_TM1L1; GAT domain found in target of Myb-like protein 1 (Tom1L1)
Nucleotide Protein
Heading Accession and Version

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