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Cntn2 contactin 2 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102004238, updated on 10-Mar-2024

Summary

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Gene symbol
Cntn2
Gene description
contactin 2
See related
Ensembl:ENSCLAG00000011919
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955406.1 (40831897..40862445)

NW_004955406.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat neuronal 2 Neighboring gene neurofascin Neighboring gene uncharacterized LOC102027267 Neighboring gene transmembrane protein 81 Neighboring gene RB binding protein 5, histone lysine methyltransferase complex subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955406.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955406.1 Reference ChiLan1.0 Primary Assembly

    Range
    40831897..40862445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005375340.1 → XP_005375397.1  contactin-2

    UniProtKB/TrEMBL
    A0A8C2VLC7
    Related
    ENSCLAP00000017354.1, ENSCLAT00000017523.1
    Conserved Domains (9) summary
    cd04968
    Location:241 → 326
    Ig3_Contactin_like; Third Ig domain of contactin
    cd04969
    Location:435 → 507
    Ig5_Contactin_like; Fifth Ig domain of contactin
    cd05727
    Location:133 → 230
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05728
    Location:330 → 414
    Ig4_Contactin-2-like; Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05854
    Location:526 → 605
    Ig6_Contactin-2; Sixth Ig domain of contactin-2
    smart00410
    Location:248 → 325
    IG_like; Immunoglobulin like
    cd00063
    Location:817 → 909
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:329 → 414
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:38 → 131
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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