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Col22a1 collagen type XXII alpha 1 chain [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102003950, updated on 10-Mar-2024

Summary

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Gene symbol
Col22a1
Gene description
collagen type XXII alpha 1 chain
See related
Ensembl:ENSCLAG00000002922
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
63
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955461.1 (12596449..12870853, complement)

NW_004955461.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102020892 Neighboring gene family with sequence similarity 135 member B Neighboring gene uncharacterized LOC106150023 Neighboring gene uncharacterized LOC102021946

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955461.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collagen alpha-1(XXII) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955461.1 Reference ChiLan1.0 Primary Assembly

    Range
    12596449..12870853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013521350.1 → XP_013376804.1  collagen alpha-1(XXII) chain

    Related
    ENSCLAP00000004092.1, ENSCLAT00000004173.1
    Conserved Domains (3) summary
    pfam01391
    Location:1284 → 1343
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:36 → 219
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:241 → 426
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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