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Trim2 tripartite motif containing 2 [ Microtus ochrogaster (prairie vole) ]

Gene ID: 101999641, updated on 8-Mar-2024

Summary

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Gene symbol
Trim2
Gene description
tripartite motif containing 2
See related
Ensembl:ENSMOCG00000015197
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
102 current MicOch1.0 (GCF_000317375.1) 1 NC_022009.1 (124220927..124337289, complement)

Chromosome 1 - NC_022009.1Genomic Context describing neighboring genes Neighboring gene transmembrane 131 like Neighboring gene receptor of activated protein C kinase 1 pseudogene Neighboring gene meiotic nuclear divisions 1 Neighboring gene uncharacterized LOC113456053 Neighboring gene FH2 domain containing 1 Neighboring gene ADP ribosylation factor interacting protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_022009.1 Chromosome 1 Reference MicOch1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NC_022009.1 Reference MicOch1.0

    Range
    124220927..124337289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013348620.2 → XP_013204074.1  tripartite motif-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8J6KTU3
    Conserved Domains (5) summary
    smart00502
    Location:161 → 287
    BBC; B-Box C-terminal domain
    smart00557
    Location:325 → 421
    IG_FLMN; Filamin-type immunoglobulin domains
    cd14960
    Location:471 → 744
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    cd16767
    Location:20 → 65
    RING-HC_TRIM2; RING finger, HC subclass, found in tripartite motif-containing protein 2 (TRIM2)
    cd19824
    Location:115 → 156
    Bbox2_TRIM2_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 2 (TRIM2) and similar proteins

  2. XM_026786081.1 → XP_026641882.1  tripartite motif-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8J6KTU3
    Related
    ENSMOCP00000016242.1, ENSMOCT00000020019.1
    Conserved Domains (5) summary
    smart00502
    Location:161 → 287
    BBC; B-Box C-terminal domain
    smart00557
    Location:325 → 421
    IG_FLMN; Filamin-type immunoglobulin domains
    cd14960
    Location:471 → 744
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    cd16767
    Location:20 → 65
    RING-HC_TRIM2; RING finger, HC subclass, found in tripartite motif-containing protein 2 (TRIM2)
    cd19824
    Location:115 → 156
    Bbox2_TRIM2_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 2 (TRIM2) and similar proteins

  3. XM_013348613.2 → XP_013204067.1  tripartite motif-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8J6KTU3
    Related
    ENSMOCP00000016239.1, ENSMOCT00000020016.1
    Conserved Domains (5) summary
    smart00502
    Location:161 → 287
    BBC; B-Box C-terminal domain
    smart00557
    Location:325 → 421
    IG_FLMN; Filamin-type immunoglobulin domains
    cd14960
    Location:471 → 744
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    cd16767
    Location:20 → 65
    RING-HC_TRIM2; RING finger, HC subclass, found in tripartite motif-containing protein 2 (TRIM2)
    cd19824
    Location:115 → 156
    Bbox2_TRIM2_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 2 (TRIM2) and similar proteins

  4. XM_005344157.2 → XP_005344214.1  tripartite motif-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J6KTU3
    Related
    ENSMOCP00000016241.1, ENSMOCT00000020018.1
    Conserved Domains (5) summary
    smart00502
    Location:178 → 304
    BBC; B-Box C-terminal domain
    smart00557
    Location:342 → 438
    IG_FLMN; Filamin-type immunoglobulin domains
    cd14960
    Location:488 → 761
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    cd16767
    Location:37 → 82
    RING-HC_TRIM2; RING finger, HC subclass, found in tripartite motif-containing protein 2 (TRIM2)
    cd19824
    Location:132 → 173
    Bbox2_TRIM2_C-VII; B-box-type 2 zinc finger found in tripartite motif-containing protein 2 (TRIM2) and similar proteins
Nucleotide Protein
Heading Accession and Version

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