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Cntfr ciliary neurotrophic factor receptor [ Microtus ochrogaster (prairie vole) ]

Gene ID: 101992789, updated on 8-Mar-2024

Summary

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Gene symbol
Cntfr
Gene description
ciliary neurotrophic factor receptor
See related
Ensembl:ENSMOCG00000003012
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: LG5
Exon count:
11
Annotation release Status Assembly LG Location
102 current MicOch1.0 (GCF_000317375.1) LG5 NC_022031.1 (37816367..37854592, complement)

Linkage Group LG5 - NC_022031.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal intermediate chain 1 Neighboring gene energy homeostasis associated Neighboring gene ribonuclease P/MRP subunit p25 like Neighboring gene dynactin subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_022031.1 Chromosome LG5 Reference MicOch1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ciliary neurotrophic factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CNTFR-CLCF1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ciliary neurotrophic factor receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ciliary neurotrophic factor receptor subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NC_022031.1 Reference MicOch1.0

    Range
    37816367..37854592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026786692.1 → XP_026642493.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    Related
    ENSMOCP00000003762.1, ENSMOCT00000004045.1
    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  2. XM_005362028.2 → XP_005362085.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    See identical proteins and their annotated locations for XP_005362085.1

    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  3. XM_005362027.3 → XP_005362084.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    See identical proteins and their annotated locations for XP_005362084.1

    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:39 → 47
    Ig; Ig strand B [structural motif]

  4. XM_013351953.2 → XP_013207407.1  ciliary neurotrophic factor receptor subunit alpha isoform X2

    Conserved Domains (3) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:31 → 105
    IG_like; Immunoglobulin like
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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