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Sgpp1 sphingosine-1-phosphate phosphatase 1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101973800, updated on 8-Mar-2024

Summary

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Gene symbol
Sgpp1
Gene description
sphingosine-1-phosphate phosphatase 1
Locus tag
H1C71_016221
See related
EnsemblRapid:ENSSTOG00015014618
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024408640.1 (66663173..66690708)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936495.1 (7500991..7528520, complement)

NW_024408640.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene WD repeat domain 89 Neighboring gene protein phosphatase 2 regulatory subunit B'epsilon Neighboring gene glycoprotein hormone subunit beta 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024408640.1 Reference HiC_Itri_2 Primary Assembly

    Range
    66663173..66690708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005322783.2 → XP_005322840.1  sphingosine-1-phosphate phosphatase 1

    UniProtKB/TrEMBL
    I3MGQ7
    Related
    ENSSTOP00015017888.1, ENSSTOT00015019613.1
    Conserved Domains (1) summary
    cd03388
    Location:126 → 275
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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