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Znf654 zinc finger protein 654 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101973273, updated on 8-Mar-2024

Summary

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Gene symbol
Znf654
Gene description
zinc finger protein 654
Locus tag
H1C71_041325
See related
EnsemblRapid:ENSSTOG00015002538
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404971.1 (1604587..1683015, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936610.1 (1604591..1683009, complement)

NW_024404971.1Genomic Context describing neighboring genes Neighboring gene casein kinase 2 subunit alpha' interacting protein Neighboring gene chromosome unknown C3orf38 homolog Neighboring gene small nucleolar RNA SNORA70 Neighboring gene eukaryotic translation initiation factor 4E type 2-like Neighboring gene CGG triplet repeat binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 654

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404971.1 Reference HiC_Itri_2 Primary Assembly

    Range
    1604587..1683015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013362343.3 → XP_013217797.1  zinc finger protein 654 isoform X1

    UniProtKB/TrEMBL
    I3N297, I3NAG5
    Related
    ENSSTOP00015003080.1, ENSSTOT00015003432.1
    Conserved Domains (2) summary
    sd00017
    Location:791 → 811
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:549 → 568
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_040286934.1 → XP_040142868.1  zinc finger protein 654 isoform X3

    Conserved Domains (2) summary
    sd00017
    Location:577 → 597
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:335 → 354
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_040286933.1 → XP_040142867.1  zinc finger protein 654 isoform X2

    UniProtKB/TrEMBL
    I3NAG5
    Conserved Domains (2) summary
    sd00017
    Location:694 → 714
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:452 → 471
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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