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Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101968741, updated on 8-Mar-2024

Summary

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Gene symbol
Csgalnact1
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1
Locus tag
H1C71_040758
See related
EnsemblRapid:ENSSTOG00015000846
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404943.1 (14762965..14931054)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936555.1 (3639459..3807483, complement)

NW_024404943.1Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 10 Neighboring gene uncharacterized LOC120892737 Neighboring gene TSC22 domain family protein 1-like Neighboring gene uncharacterized LOC120892765 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene SH2 domain containing 4A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404943.1 Reference HiC_Itri_2 Primary Assembly

    Range
    14762965..14931054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013360341.3 → XP_013215795.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    I3MY44
    Related
    ENSSTOP00015001020.1, ENSSTOT00015001122.1
    Conserved Domains (1) summary
    cl11394
    Location:68 → 509
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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