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Epn1 epsin 1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101967835, updated on 8-Mar-2024

Summary

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Gene symbol
Epn1
Gene description
epsin 1
Locus tag
H1C71_038554
See related
EnsemblRapid:ENSSTOG00015007951
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024409349.1 (1684602..1703390, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936981.1 (194176..213021)

NW_024409349.1Genomic Context describing neighboring genes Neighboring gene NACHT, LRR and PYD domains-containing protein 4 Neighboring gene ret finger protein-like 4A Neighboring gene U2 small nuclear RNA auxiliary factor 2 Neighboring gene coiled-coil domain containing 106

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
epsin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024409349.1 Reference HiC_Itri_2 Primary Assembly

    Range
    1684602..1703390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005342215.4 → XP_005342272.1  epsin-1 isoform X2

    Conserved Domains (3) summary
    PHA03247
    Location:169 → 501
    PHA03247; large tegument protein UL36; Provisional
    PRK07764
    Location:272 → 413
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd16990
    Location:19 → 142
    ENTH_Epsin; Epsin N-Terminal Homology (ENTH) domain of Epsin family

  2. XM_005342213.4 → XP_005342270.1  epsin-1 isoform X1

    UniProtKB/TrEMBL
    I3N8J4
    Related
    ENSSTOP00015009790.1, ENSSTOT00015010758.1
    Conserved Domains (3) summary
    PHA03307
    Location:152 → 440
    PHA03307; transcriptional regulator ICP4; Provisional
    PRK07764
    Location:297 → 438
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    cd16990
    Location:19 → 142
    ENTH_Epsin; Epsin N-Terminal Homology (ENTH) domain of Epsin family
Nucleotide Protein
Heading Accession and Version

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