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Ccdc88a coiled-coil domain containing 88A [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101964536, updated on 8-Mar-2024

Summary

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Gene symbol
Ccdc88a
Gene description
coiled-coil domain containing 88A
Locus tag
H1C71_034766
See related
EnsemblRapid:ENSSTOG00015002821
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Ccdc88a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024406292.1 (26767303..26901093)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936491.1 (1670192..1804056, complement)

NW_024406292.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120884957 Neighboring gene U6 spliceosomal RNA Neighboring gene ubiquitin-60S ribosomal protein L40-like Neighboring gene prolyl-tRNA synthetase associated domain-containing protein 1 Neighboring gene mitochondrial translational initiation factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein light intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton-dependent intracellular transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
girdin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024406292.1 Reference HiC_Itri_2 Primary Assembly

    Range
    26767303..26901093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021724274.2 → XP_021579949.1  girdin isoform X3

    UniProtKB/TrEMBL
    I3N1X8
    Conserved Domains (3) summary
    PRK02224
    Location:201 → 713
    PRK02224; DNA double-strand break repair Rad50 ATPase
    COG1196
    Location:533 → 1308
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd22229
    Location:10 → 165
    HkD_Girdin; Hook domain found in Girdin and similar proteins

  2. XM_021724275.2 → XP_021579950.1  girdin isoform X4

    UniProtKB/TrEMBL
    I3N0H0
    Related
    ENSSTOP00015003431.1, ENSSTOT00015003819.1
    Conserved Domains (3) summary
    PRK02224
    Location:201 → 713
    PRK02224; DNA double-strand break repair Rad50 ATPase
    COG1196
    Location:533 → 1308
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd22229
    Location:10 → 165
    HkD_Girdin; Hook domain found in Girdin and similar proteins

  3. XM_040271362.1 → XP_040127296.1  girdin isoform X1

    Conserved Domains (1) summary
    COG1196
    Location:533 → 1331
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_040271363.1 → XP_040127297.1  girdin isoform X2

    Conserved Domains (1) summary
    COG1196
    Location:533 → 1331
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  5. XM_040271364.1 → XP_040127298.1  girdin isoform X5

    Conserved Domains (2) summary
    COG0419
    Location:8 → 462
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:294 → 1069
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RNA

  1. XR_005727540.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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