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Dcaf5 DDB1 and CUL4 associated factor 5 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101961515, updated on 8-Mar-2024

Summary

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Gene symbol
Dcaf5
Gene description
DDB1 and CUL4 associated factor 5
Locus tag
H1C71_016166
See related
EnsemblRapid:ENSSTOG00015011919
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024408640.1 (61806363..61902051)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936495.1 (12289648..12357640, complement)

NW_024408640.1Genomic Context describing neighboring genes Neighboring gene general transcription factor IIH subunit 5-like Neighboring gene uncharacterized LOC120886547 Neighboring gene actinin alpha 1 Neighboring gene ZFP36 ring finger protein like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DDB1- and CUL4-associated factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024408640.1 Reference HiC_Itri_2 Primary Assembly

    Range
    61806363..61902051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040276420.1 → XP_040132354.1  DDB1- and CUL4-associated factor 5 isoform X1

    UniProtKB/TrEMBL
    I3MU74
    Related
    ENSSTOP00015014618.1, ENSSTOT00015016023.1
    Conserved Domains (2) summary
    sd00039
    Location:22 → 58
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:13 → 317
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_021724833.2 → XP_021580508.1  DDB1- and CUL4-associated factor 5 isoform X1

    UniProtKB/TrEMBL
    I3MU74
    Conserved Domains (2) summary
    sd00039
    Location:22 → 58
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:13 → 317
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_021724834.2 → XP_021580509.1  DDB1- and CUL4-associated factor 5 isoform X2

    UniProtKB/TrEMBL
    I3MU74
    Conserved Domains (2) summary
    sd00039
    Location:22 → 56
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:13 → 316
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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