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Sf1 splicing factor 1 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101954758, updated on 8-Mar-2024

Summary

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Gene symbol
Sf1
Gene description
splicing factor 1
Locus tag
H1C71_008306
See related
EnsemblRapid:ENSSTOG00015021759
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404947.1 (8091417..8104506)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936599.1 (4533664..4546857)

NW_024404947.1Genomic Context describing neighboring genes Neighboring gene menin 1 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 2 Neighboring gene glycogen phosphorylase, muscle associated Neighboring gene RAS guanyl releasing protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404947.1 Reference HiC_Itri_2 Primary Assembly

    Range
    8091417..8104506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040284157.1 → XP_040140091.1  splicing factor 1 isoform X9

    UniProtKB/TrEMBL
    A0A287DE08
    Related
    ENSSTOP00015026883.1, ENSSTOT00015029217.1
    Conserved Domains (2) summary
    smart00343
    Location:252 → 267
    ZnF_C2HC; zinc finger
    COG5176
    Location:10 → 231
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  2. XM_040284154.1 → XP_040140088.1  splicing factor 1 isoform X6

    UniProtKB/TrEMBL
    I3ME85
    Related
    ENSSTOP00015026881.1, ENSSTOT00015029215.1
    Conserved Domains (2) summary
    smart00343
    Location:252 → 267
    ZnF_C2HC; zinc finger
    COG5176
    Location:10 → 231
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  3. XM_040284155.1 → XP_040140089.1  splicing factor 1 isoform X7

    Conserved Domains (2) summary
    smart00343
    Location:252 → 267
    ZnF_C2HC; zinc finger
    COG5176
    Location:10 → 231
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  4. XM_005333479.4 → XP_005333536.1  splicing factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A287DE08
    Related
    ENSSTOP00015026884.1, ENSSTOT00015029218.1
    Conserved Domains (2) summary
    smart00343
    Location:252 → 267
    ZnF_C2HC; zinc finger
    COG5176
    Location:10 → 231
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  5. XM_040284156.1 → XP_040140090.1  splicing factor 1 isoform X8

    UniProtKB/TrEMBL
    A0A287DCH6
    Conserved Domains (2) summary
    smart00343
    Location:252 → 267
    ZnF_C2HC; zinc finger
    COG5176
    Location:10 → 231
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  6. XM_040284153.1 → XP_040140087.1  splicing factor 1 isoform X5

    UniProtKB/TrEMBL
    A0A287DCH6
    Conserved Domains (2) summary
    smart00343
    Location:232 → 247
    ZnF_C2HC; zinc finger
    COG5176
    Location:33 → 211
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  7. XM_005333477.4 → XP_005333534.1  splicing factor 1 isoform X2

    Conserved Domains (2) summary
    smart00343
    Location:252 → 267
    ZnF_C2HC; zinc finger
    COG5176
    Location:10 → 231
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  8. XM_005333476.4 → XP_005333533.1  splicing factor 1 isoform X1

    UniProtKB/TrEMBL
    I3ME85
    Conserved Domains (3) summary
    smart00343
    Location:232 → 247
    ZnF_C2HC; zinc finger
    pfam16275
    Location:29 → 84
    SF1-HH; Splicing factor 1 helix-hairpin domain
    cd22382
    Location:89 → 181
    KH-I_SF1; type I K homology (KH) RNA-binding domain found in splicing factor 1 (SF1) and similar proteins

  9. XM_013362024.3 → XP_013217478.1  splicing factor 1 isoform X4

    Conserved Domains (2) summary
    smart00343
    Location:252 → 267
    ZnF_C2HC; zinc finger
    COG5176
    Location:10 → 231
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
Nucleotide Protein
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