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LIG4 DNA ligase 4 [ Chrysemys picta bellii (western painted turtle) ]

Gene ID: 101953077, updated on 11-Jun-2024

Summary

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Gene symbol
LIG4
Gene description
DNA ligase 4
See related
Ensembl:ENSCPBG00000023291
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta bellii (sub-species: bellii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 1 NC_088791.1 (249378379..249387447)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007359860.1 (804896..814113)

Chromosome 1 - NC_088791.1Genomic Context describing neighboring genes Neighboring gene myosin XVI Neighboring gene TNF superfamily member 13b Neighboring gene abhydrolase domain containing 13 Neighboring gene NALCN channel auxiliary factor 1 Neighboring gene uncharacterized LOC135980808 Neighboring gene uncharacterized LOC135980807

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA ligation involved in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immunoglobulin V(D)J recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA gap filling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA ligase IV complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of DNA-dependent protein kinase-DNA ligase 4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA ligase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1138683v2

Genomic

  1. NC_088791.1 Reference ASM1138683v2

    Range
    249378379..249387447
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024100098.3 → XP_023955866.1  DNA ligase 4

    UniProtKB/TrEMBL
    A0A8C3IIB1
    Related
    ENSCPBP00000033291.1
    Conserved Domains (4) summary
    TIGR00574
    Location:86 → 608
    dnl1; DNA ligase I, ATP-dependent (dnl1)
    cd17717
    Location:816 → 903
    BRCT_DNA_ligase_IV_rpt2; second BRCT domain of DNA ligase 4 (LIG4) and similar proteins
    cd17722
    Location:663 → 750
    BRCT_DNA_ligase_IV_rpt1; first BRCT domain of DNA ligase 4 (LIG4) and similar proteins
    pfam11411
    Location:755 → 788
    DNA_ligase_IV; DNA ligase IV

  2. XM_005304993.4 → XP_005305050.1  DNA ligase 4

    UniProtKB/TrEMBL
    A0A8C3IIB1
    Conserved Domains (4) summary
    TIGR00574
    Location:86 → 608
    dnl1; DNA ligase I, ATP-dependent (dnl1)
    cd17717
    Location:816 → 903
    BRCT_DNA_ligase_IV_rpt2; second BRCT domain of DNA ligase 4 (LIG4) and similar proteins
    cd17722
    Location:663 → 750
    BRCT_DNA_ligase_IV_rpt1; first BRCT domain of DNA ligase 4 (LIG4) and similar proteins
    pfam11411
    Location:755 → 788
    DNA_ligase_IV; DNA ligase IV
Nucleotide Protein
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