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ATOH1 atonal bHLH transcription factor 1 [ Chrysemys picta bellii (western painted turtle) ]

Gene ID: 101944840, updated on 1-Aug-2024

Summary

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Gene symbol
ATOH1
Gene description
atonal bHLH transcription factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta bellii (sub-species: bellii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 5 NC_088795.1 (21526229..21528328, complement)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007359856.1 (1410510..1411436)

Chromosome 5 - NC_088795.1Genomic Context describing neighboring genes Neighboring gene SNF2 related chromatin remodeling ATPase with DExD box 1 Neighboring gene uncharacterized LOC135984096 Neighboring gene uncharacterized LOC135983557 Neighboring gene uncharacterized LOC135983558 Neighboring gene glutamate ionotropic receptor delta type subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables E-box binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ATOH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1138683v2

Genomic

  1. NC_088795.1 Reference ASM1138683v2

    Range
    21526229..21528328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005278558.3 → XP_005278615.1  transcription factor ATOH1

    UniProtKB/TrEMBL
    A0AAJ6W129
    Conserved Domains (1) summary
    cd00083
    Location:132 → 190
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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