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NFIB nuclear factor I B [ Chrysemys picta bellii (western painted turtle) ]

Gene ID: 101942024, updated on 1-Aug-2024

Summary

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Gene symbol
NFIB
Gene description
nuclear factor I B
See related
Ensembl:ENSCPBG00000025357
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta bellii (sub-species: bellii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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See NFIB in Genome Data Viewer
Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 6 NC_088796.1 (106001128..106221035)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007281361.1 (2014258..2240935)

Chromosome 6 - NC_088796.1Genomic Context describing neighboring genes Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene uncharacterized LOC135972251 Neighboring gene uncharacterized LOC101943767

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor 1 B-type

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1138683v2

Genomic

  1. NC_088796.1 Reference ASM1138683v2

    Range
    106001128..106221035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065549508.1 → XP_065405580.1  nuclear factor 1 B-type isoform X2

    UniProtKB/TrEMBL
    A0AAJ6REC8

  2. XM_065549511.1 → XP_065405583.1  nuclear factor 1 B-type isoform X5

    UniProtKB/TrEMBL
    A0A8C3PE98

  3. XM_065549524.1 → XP_065405596.1  nuclear factor 1 B-type isoform X19

    UniProtKB/TrEMBL
    A0A8C3IN69, A0A8C3PE98

  4. XM_065549515.1 → XP_065405587.1  nuclear factor 1 B-type isoform X9

    UniProtKB/TrEMBL
    A0AAJ6REA2

  5. XM_065549528.1 → XP_065405600.1  nuclear factor 1 B-type isoform X23

    UniProtKB/TrEMBL
    A0AAJ6REA2

  6. XM_065549519.1 → XP_065405591.1  nuclear factor 1 B-type isoform X12

    UniProtKB/TrEMBL
    A0AAJ6REK5

  7. XM_065549532.1 → XP_065405604.1  nuclear factor 1 B-type isoform X27

    UniProtKB/TrEMBL
    A0AAJ6REK5

  8. XM_065549538.1 → XP_065405610.1  nuclear factor 1 B-type isoform X35

  9. XM_065549523.1 → XP_065405595.1  nuclear factor 1 B-type isoform X16

    UniProtKB/TrEMBL
    A0A8C3INU8

  10. XM_065549536.1 → XP_065405608.1  nuclear factor 1 B-type isoform X31

    UniProtKB/TrEMBL
    A0A8C3INU8

  11. XM_065549507.1 → XP_065405579.1  nuclear factor 1 B-type isoform X1

    UniProtKB/TrEMBL
    A0A8C3PE98

  12. XM_005295178.5 → XP_005295235.1  nuclear factor 1 B-type isoform X17

    UniProtKB/TrEMBL
    A0A8C3PE98, A0AAJ6REJ4
    Conserved Domains (3) summary
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:209 → 525
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  13. XM_065549509.1 → XP_065405581.1  nuclear factor 1 B-type isoform X3

    UniProtKB/TrEMBL
    A0A8C3PE98

  14. XM_005295180.5 → XP_005295237.1  nuclear factor 1 B-type isoform X18

    UniProtKB/TrEMBL
    A0A8C3IQP8, A0A8C3PE98
    Related
    ENSCPBP00000036518.1
    Conserved Domains (3) summary
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:209 → 516
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  15. XM_005295181.5 → XP_005295238.1  nuclear factor 1 B-type isoform X33

    UniProtKB/TrEMBL
    A0A8C3INX3, A0A8C3PE98
    Related
    ENSCPBP00000036529.1
    Conserved Domains (3) summary
    cl00055
    Location:69 → 173
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:209 → 438
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:9 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  16. XM_042850507.2 → XP_042706441.1  nuclear factor 1 B-type isoform X37

    UniProtKB/TrEMBL
    A0AAJ7YEL8
    Conserved Domains (2) summary
    pfam10524
    Location:10 → 47
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:68 → 176
    MH1; N-terminal Mad Homology 1 (MH1) domain

  17. XM_065549514.1 → XP_065405586.1  nuclear factor 1 B-type isoform X8

    UniProtKB/TrEMBL
    A0AAJ6REA2

  18. XM_065549527.1 → XP_065405599.1  nuclear factor 1 B-type isoform X22

    UniProtKB/TrEMBL
    A0AAJ6REA2

  19. XM_065549516.1 → XP_065405588.1  nuclear factor 1 B-type isoform X10

    UniProtKB/TrEMBL
    A0AAJ6REK5

  20. XM_065549530.1 → XP_065405602.1  nuclear factor 1 B-type isoform X25

    UniProtKB/TrEMBL
    A0A8C3IN79, A0AAJ6REK5

  21. XM_065549537.1 → XP_065405609.1  nuclear factor 1 B-type isoform X34

  22. XM_065549541.1 → XP_065405613.1  nuclear factor 1 B-type isoform X39

  23. XM_065549513.1 → XP_065405585.1  nuclear factor 1 B-type isoform X7

    UniProtKB/TrEMBL
    A0AAJ7YEM2

  24. XM_065549526.1 → XP_065405598.1  nuclear factor 1 B-type isoform X21

    UniProtKB/TrEMBL
    A0A8C3PE98

  25. XM_065549529.1 → XP_065405601.1  nuclear factor 1 B-type isoform X24

    UniProtKB/TrEMBL
    A0A8C3IQF5, A0A8C3PE98

  26. XM_065549521.1 → XP_065405593.1  nuclear factor 1 B-type isoform X14

    UniProtKB/TrEMBL
    A0AAJ6REA2

  27. XM_065549534.1 → XP_065405606.1  nuclear factor 1 B-type isoform X29

    UniProtKB/TrEMBL
    A0A8C3PE98

  28. XM_065549522.1 → XP_065405594.1  nuclear factor 1 B-type isoform X15

    UniProtKB/TrEMBL
    A0A8C3PE98

  29. XM_065549535.1 → XP_065405607.1  nuclear factor 1 B-type isoform X30

    UniProtKB/TrEMBL
    A0A8C3PE98

  30. XM_065549540.1 → XP_065405612.1  nuclear factor 1 B-type isoform X38

  31. XM_042850506.2 → XP_042706440.2  nuclear factor 1 B-type isoform X32

    UniProtKB/TrEMBL
    A0AAJ7YEL9

  32. XM_065549520.1 → XP_065405592.1  nuclear factor 1 B-type isoform X13

    UniProtKB/TrEMBL
    A0AAJ6REK5

  33. XM_065549533.1 → XP_065405605.1  nuclear factor 1 B-type isoform X28

    UniProtKB/TrEMBL
    A0AAJ6REK5

  34. XM_065549531.1 → XP_065405603.1  nuclear factor 1 B-type isoform X26

    UniProtKB/TrEMBL
    A0AAJ6REA2

  35. XM_065549539.1 → XP_065405611.1  nuclear factor 1 B-type isoform X36

  36. XM_065549517.1 → XP_065405589.1  nuclear factor 1 B-type isoform X11

    UniProtKB/TrEMBL
    A0AAJ6REA2

  37. XM_065549510.1 → XP_065405582.1  nuclear factor 1 B-type isoform X4

    UniProtKB/TrEMBL
    A0AAJ6REC8

  38. XM_065549512.1 → XP_065405584.1  nuclear factor 1 B-type isoform X6

    UniProtKB/TrEMBL
    A0A8C3PE98

  39. XM_065549525.1 → XP_065405597.1  nuclear factor 1 B-type isoform X20

    UniProtKB/TrEMBL
    A0A8C3PE98

RNA

  1. XR_010588659.1 RNA Sequence

  2. XR_010588660.1 RNA Sequence

  3. XR_010588663.1 RNA Sequence

  4. XR_010588658.1 RNA Sequence

  5. XR_010588662.1 RNA Sequence

  6. XR_010588661.1 RNA Sequence

Nucleotide Protein
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