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DDX5 DEAD-box helicase 5 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101926602, updated on 12-Jun-2024

Summary

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Gene symbol
DDX5
Gene description
DEAD-box helicase 5
See related
Ensembl:ENSMFAG00000026858
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See DDX5 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 16 NC_088390.1 (71091822..71099058, complement)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 16 NC_052270.1 (18565773..18573001)

Chromosome 16 - NC_088390.1Genomic Context describing neighboring genes Neighboring gene mast cell immunoglobulin like receptor 1 Neighboring gene ATP synthase subunit f, mitochondrial-like Neighboring gene DNA polymerase gamma 2, accessory subunit Neighboring gene centrosomal protein 95 Neighboring gene SMAD specific E3 ubiquitin protein ligase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. Osada N, et al. Mol Biol Evol, 2005 Oct. PMID 15944441
  2. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonucleoprotein complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX5
Names
DEAD box protein 5
Probable ATP-dependent RNA helicase DDX5
XP_005584770.1
XP_015293328.1
XP_045230511.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088390.1 Reference T2T-MFA8v1.0

    Range
    71091822..71099058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045374576.2 → XP_045230511.1  probable ATP-dependent RNA helicase DDX5 isoform X1

    UniProtKB/Swiss-Prot
    Q4R6M5
    UniProtKB/TrEMBL
    A0A2K5ULU9
    Conserved Domains (2) summary
    PTZ00110
    Location:6 → 507
    PTZ00110; helicase; Provisional
    pfam08061
    Location:498 → 532
    P68HR; P68HR (NUC004) repeat

  2. XM_015437842.3 → XP_015293328.1  probable ATP-dependent RNA helicase DDX5 isoform X1

    UniProtKB/Swiss-Prot
    Q4R6M5
    UniProtKB/TrEMBL
    A0A2K5ULU9
    Conserved Domains (2) summary
    PTZ00110
    Location:6 → 507
    PTZ00110; helicase; Provisional
    pfam08061
    Location:498 → 532
    P68HR; P68HR (NUC004) repeat

  3. XM_005584713.4 → XP_005584770.1  probable ATP-dependent RNA helicase DDX5 isoform X2

    See identical proteins and their annotated locations for XP_005584770.1

    UniProtKB/Swiss-Prot
    Q4R6M5
    Conserved Domains (2) summary
    PTZ00110
    Location:6 → 401
    PTZ00110; helicase; Provisional
    pfam08061
    Location:476 → 508
    P68HR; P68HR (NUC004) repeat

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001284989.1: Suppressed sequence

    Description
    NM_001284989.1: This RefSeq record was removed as a result of standard genome annotation processing. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4R6M5.1 GenPept UniProtKB/Swiss-Prot:Q4R6M5

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