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LOC101878648 CUGBP Elav-like family member 1 [ Melopsittacus undulatus (budgerigar) ]

Gene ID: 101878648, updated on 8-Mar-2024

Summary

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Gene symbol
LOC101878648
Gene description
CUGBP Elav-like family member 1
See related
Ensembl:ENSMUNG00015007474
Gene type
protein coding
RefSeq status
MODEL
Organism
Melopsittacus undulatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Psittaciformes; Psittaculidae; Melopsittacus
Also known as
CELF1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
104 current bMelUnd1.mat.Z (GCF_012275295.1) 4 NC_047530.1 (5643848..5707029)
103 previous assembly Melopsittacus_undulatus_6.3 (GCF_000238935.1) Unplaced Scaffold NW_004848288.1 (2911669..2956648)

Chromosome 4 - NC_047530.1Genomic Context describing neighboring genes Neighboring gene kelch repeat and BTB domain containing 4 Neighboring gene protein tyrosine phosphatase mitochondrial 1 Neighboring gene receptor associated protein of the synapse Neighboring gene proteasome 26S subunit, ATPase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CUGBP Elav-like family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Melopsittacus undulatus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bMelUnd1.mat.Z

Genomic

  1. NC_047530.1 Reference bMelUnd1.mat.Z

    Range
    5643848..5707029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034062682.1 → XP_033918573.1  CUGBP Elav-like family member 1 isoform X1

    Conserved Domains (3) summary
    cd12638
    Location:397 → 488
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  2. XM_034062685.1 → XP_033918576.1  CUGBP Elav-like family member 1 isoform X5

    Conserved Domains (3) summary
    cd12638
    Location:393 → 484
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  3. XM_034062686.1 → XP_033918577.1  CUGBP Elav-like family member 1 isoform X6

    UniProtKB/TrEMBL
    A0A8C6JYB2
    Related
    ENSMUNP00015010461.1, ENSMUNT00015010916.1
    Conserved Domains (3) summary
    cd12638
    Location:392 → 483
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  4. XM_034062683.1 → XP_033918574.1  CUGBP Elav-like family member 1 isoform X3

    Conserved Domains (3) summary
    cd12638
    Location:396 → 487
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:106 → 186
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  5. XM_034062684.1 → XP_033918575.1  CUGBP Elav-like family member 1 isoform X4

    Conserved Domains (3) summary
    cd12638
    Location:395 → 486
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:106 → 186
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  6. XM_034062687.1 → XP_033918578.1  CUGBP Elav-like family member 1 isoform X7

    Conserved Domains (3) summary
    cd12638
    Location:392 → 483
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:106 → 186
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  7. XM_034062688.1 → XP_033918579.1  CUGBP Elav-like family member 1 isoform X8

    Conserved Domains (3) summary
    cd12638
    Location:391 → 482
    RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:106 → 186
    RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins

  8. XM_013130307.3 → XP_012985761.1  CUGBP Elav-like family member 1 isoform X2

    See identical proteins and their annotated locations for XP_012985761.1

    Conserved Domains (3) summary
    cd12631
    Location:15 → 98
    RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
    cd12634
    Location:107 → 187
    RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    cd12638
    Location:396 → 487
    RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
Nucleotide Protein
Heading Accession and Version

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