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Pdzd2 PDZ domain containing 2 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101842714, updated on 8-Mar-2024

Summary

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Gene symbol
Pdzd2
Gene description
PDZ domain containing 2
See related
EnsemblRapid:ENSMAUG00000013935
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429198.1 (8188263..8554962, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801682.1 (9469750..9836949, complement)

NW_024429198.1Genomic Context describing neighboring genes Neighboring gene elongation factor 1-alpha 1-like Neighboring gene golgi phosphoprotein 3 Neighboring gene U1 spliceosomal RNA Neighboring gene chromosome unknown C5orf22 homolog Neighboring gene drosha ribonuclease III

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PDZ domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429198.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    8188263..8554962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005078018.4 → XP_005078075.1  PDZ domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_005078075.1

    UniProtKB/TrEMBL
    A0A1U8C4X5
    Conserved Domains (3) summary
    smart00228
    Location:2713 → 2795
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    PHA03307
    Location:988 → 1333
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:590 → 671
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_040757639.1 → XP_040613573.1  PDZ domain-containing protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0D4H5
    Related
    ENSMAUP00000055457.1, ENSMAUT00000044355.1
    Conserved Domains (3) summary
    smart00228
    Location:2569 → 2651
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    PHA03307
    Location:844 → 1189
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:446 → 527
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  3. XM_040757637.1 → XP_040613571.1  PDZ domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0D2E8
    Related
    ENSMAUP00000034456.1, ENSMAUT00000078834.1
    Conserved Domains (3) summary
    smart00228
    Location:2661 → 2743
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    PHA03307
    Location:936 → 1281
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:538 → 619
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  4. XM_040757634.1 → XP_040613568.1  PDZ domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A1U8C4X5
    Related
    ENSMAUP00000034344.1, ENSMAUT00000064052.1
    Conserved Domains (3) summary
    smart00228
    Location:2713 → 2795
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    PHA03307
    Location:988 → 1333
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:590 → 671
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  5. XM_040757635.1 → XP_040613569.1  PDZ domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A1U8C4X5
    Conserved Domains (3) summary
    smart00228
    Location:2713 → 2795
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    PHA03307
    Location:988 → 1333
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:590 → 671
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  6. XM_013119061.3 → XP_012974515.1  PDZ domain-containing protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A1U8C7X2
    Conserved Domains (3) summary
    smart00228
    Location:2539 → 2621
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    PHA03307
    Location:814 → 1159
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:416 → 497
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  7. XM_040757640.1 → XP_040613574.1  PDZ domain-containing protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A1U8C7X2
    Related
    ENSMAUP00000014114.2, ENSMAUT00000018029.2
    Conserved Domains (3) summary
    smart00228
    Location:2539 → 2621
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    PHA03307
    Location:814 → 1159
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:416 → 497
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  8. XM_040757641.1 → XP_040613575.1  PDZ domain-containing protein 2 isoform X6

    Conserved Domains (3) summary
    smart00228
    Location:2412 → 2494
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    PHA03307
    Location:687 → 1032
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:289 → 370
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  9. XM_040757638.1 → XP_040613572.1  PDZ domain-containing protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0D3K7
    Conserved Domains (2) summary
    PHA03307
    Location:988 → 1333
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:590 → 671
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
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