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Ptcd1 pentatricopeptide repeat domain 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101837718, updated on 8-Mar-2024

Summary

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Gene symbol
Ptcd1
Gene description
pentatricopeptide repeat domain 1
See related
EnsemblRapid:ENSMAUG00000011008
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429192.1 (83277456..83292308, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801699.1 (694736..709159)

NW_024429192.1Genomic Context describing neighboring genes Neighboring gene actin related protein 2/3 complex subunit 1B Neighboring gene PDGFA associated protein 1 Neighboring gene BUD31 homolog Neighboring gene cleavage and polyadenylation specific factor 4 Neighboring gene ATP synthase membrane subunit f

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429192.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    83277456..83292308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013120462.3 → XP_012975916.1  pentatricopeptide repeat-containing protein 1, mitochondrial

    See identical proteins and their annotated locations for XP_012975916.1

    UniProtKB/TrEMBL
    A0A1U8C8Y7
    Related
    ENSMAUP00000031248.1, ENSMAUT00000044349.1
    Conserved Domains (3) summary
    TIGR00756
    Location:180 → 212
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:180 → 206
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:180 → 223
    PPR_2; PPR repeat family

  2. XM_013120463.3 → XP_012975917.1  pentatricopeptide repeat-containing protein 1, mitochondrial

    See identical proteins and their annotated locations for XP_012975917.1

    UniProtKB/TrEMBL
    A0A1U8C8Y7
    Related
    ENSMAUP00000044699.1, ENSMAUT00000041635.1
    Conserved Domains (3) summary
    TIGR00756
    Location:180 → 212
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:180 → 206
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:180 → 223
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

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