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CRISPLD1 cysteine rich secretory protein LCCL domain containing 1 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101822041, updated on 3-Aug-2024

Summary

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Gene symbol
CRISPLD1
Gene description
cysteine rich secretory protein LCCL domain containing 1
See related
Ensembl:ENSFALG00000008574
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 2 NC_021673.1 (125114199..125149920)

Chromosome 2 - NC_021673.1Genomic Context describing neighboring genes Neighboring gene ganglioside induced differentiation associated protein 1 Neighboring gene peptidase inhibitor 15 Neighboring gene hepatocyte nuclear factor 4 gamma Neighboring gene zinc finger homeobox 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021673.1 Chromosome 2 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine-rich secretory protein LCCL domain-containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021673.1 Reference FicAlb1.5 Primary Assembly

    Range
    125114199..125149920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005042204.2 → XP_005042261.1  cysteine-rich secretory protein LCCL domain-containing 1 isoform X1

    UniProtKB/TrEMBL
    U3K1N7
    Related
    ENSFALP00000008941.1, ENSFALT00000008979.2
    Conserved Domains (3) summary
    smart00603
    Location:304 → 388
    LCCL; LCCL domain
    cd05380
    Location:63 → 207
    SCP_euk; SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed ...
    pfam03815
    Location:407 → 505
    LCCL; LCCL domain

  2. XM_005042205.2 → XP_005042262.1  cysteine-rich secretory protein LCCL domain-containing 1 isoform X2

    Conserved Domains (3) summary
    smart00603
    Location:221 → 305
    LCCL; LCCL domain
    cd05380
    Location:1 → 124
    SCP_euk; SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed ...
    pfam03815
    Location:324 → 422
    LCCL; LCCL domain
Nucleotide Protein
Heading Accession and Version

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