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PROX1 prospero homeobox 1 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101816695, updated on 3-Aug-2024

Summary

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Gene symbol
PROX1
Gene description
prospero homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 3 NC_021674.1 (21239364..21287638, complement)

Chromosome 3 - NC_021674.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107603527 Neighboring gene SET and MYND domain containing 2 Neighboring gene ribosomal protein S6 kinase C1 Neighboring gene angel homolog 2 Neighboring gene vasohibin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021674.1 Chromosome 3 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prospero homeobox protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021674.1 Reference FicAlb1.5 Primary Assembly

    Range
    21239364..21287638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005043077.1 → XP_005043134.1  prospero homeobox protein 1

    See identical proteins and their annotated locations for XP_005043134.1

    UniProtKB/TrEMBL
    U3KD00
    Conserved Domains (1) summary
    pfam05044
    Location:578 → 729
    HPD; Homeo-prospero domain
Nucleotide Protein
Heading Accession and Version

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