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TRPS1 transcriptional repressor GATA binding 1 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101814657, updated on 3-Aug-2024

Summary

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Gene symbol
TRPS1
Gene description
transcriptional repressor GATA binding 1
See related
Ensembl:ENSFALG00000002296
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 2 NC_021673.1 (142315774..142535834, complement)

Chromosome 2 - NC_021673.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel modifier subfamily V member 1 Neighboring gene CUB and Sushi multiple domains 3 Neighboring gene uncharacterized LOC101815128 Neighboring gene eukaryotic translation initiation factor 3 subunit H

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021673.1 Chromosome 2 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor Trps1
Names
trichorhinophalangeal syndrome I

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021673.1 Reference FicAlb1.5 Primary Assembly

    Range
    142315774..142535834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005042430.2 → XP_005042487.1  zinc finger transcription factor Trps1 isoform X2

    UniProtKB/TrEMBL
    A0A803V292
    Related
    ENSFALP00000016848.1, ENSFALT00000031178.1
    Conserved Domains (2) summary
    smart00401
    Location:897 → 940
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:901 → 957
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  2. XM_005042429.1 → XP_005042486.1  zinc finger transcription factor Trps1 isoform X1

    See identical proteins and their annotated locations for XP_005042486.1

    UniProtKB/TrEMBL
    A0A803VGX3, U3JHY5
    Related
    ENSFALP00000002389.1, ENSFALT00000002401.2
    Conserved Domains (2) summary
    smart00401
    Location:904 → 947
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:908 → 964
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
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