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HIC2 HIC ZBTB transcriptional repressor 2 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101813701, updated on 3-Aug-2024

Summary

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Gene symbol
HIC2
Gene description
HIC ZBTB transcriptional repressor 2
See related
Ensembl:ENSFALG00000014495
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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See HIC2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 15 NC_021687.1 (8835537..8910977)

Chromosome 15 - NC_021687.1Genomic Context describing neighboring genes Neighboring gene stromal cell derived factor 2 like 1 Neighboring gene YdjC chitooligosaccharide deacetylase homolog Neighboring gene ubiquitin conjugating enzyme E2 L3 Neighboring gene phosphatidylinositol 4-kinase alpha Neighboring gene serpin family D member 1 Neighboring gene synaptosome associated protein 29

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021687.1 Chromosome 15 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypermethylated in cancer 2 protein
Names
hypermethylated in cancer 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021687.1 Reference FicAlb1.5 Primary Assembly

    Range
    8835537..8910977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016302348.1 → XP_016157834.1  hypermethylated in cancer 2 protein

    UniProtKB/TrEMBL
    U3KJA6
    Conserved Domains (6) summary
    smart00225
    Location:25 → 120
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:514 → 568
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:490 → 510
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:488 → 510
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:18 → 118
    BTB; BTB/POZ domain
    pfam13465
    Location:531 → 555
    zf-H2C2_2; Zinc-finger double domain

  2. XM_016302349.1 → XP_016157835.1  hypermethylated in cancer 2 protein

    UniProtKB/TrEMBL
    U3KJA6
    Conserved Domains (6) summary
    smart00225
    Location:25 → 120
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:514 → 568
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:490 → 510
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:488 → 510
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:18 → 118
    BTB; BTB/POZ domain
    pfam13465
    Location:531 → 555
    zf-H2C2_2; Zinc-finger double domain

  3. XM_005054901.1 → XP_005054958.1  hypermethylated in cancer 2 protein

    See identical proteins and their annotated locations for XP_005054958.1

    UniProtKB/TrEMBL
    U3KJA6
    Conserved Domains (6) summary
    smart00225
    Location:25 → 120
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:514 → 568
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:490 → 510
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:488 → 510
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:18 → 118
    BTB; BTB/POZ domain
    pfam13465
    Location:531 → 555
    zf-H2C2_2; Zinc-finger double domain

  4. XM_005054902.2 → XP_005054959.1  hypermethylated in cancer 2 protein

    See identical proteins and their annotated locations for XP_005054959.1

    UniProtKB/TrEMBL
    U3KJA6
    Conserved Domains (6) summary
    smart00225
    Location:25 → 120
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:514 → 568
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:490 → 510
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:488 → 510
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:18 → 118
    BTB; BTB/POZ domain
    pfam13465
    Location:531 → 555
    zf-H2C2_2; Zinc-finger double domain

  5. XM_005054903.2 → XP_005054960.1  hypermethylated in cancer 2 protein

    See identical proteins and their annotated locations for XP_005054960.1

    UniProtKB/TrEMBL
    U3KJA6
    Related
    ENSFALP00000015110.1, ENSFALT00000015175.2
    Conserved Domains (6) summary
    smart00225
    Location:25 → 120
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:514 → 568
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:490 → 510
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:488 → 510
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:18 → 118
    BTB; BTB/POZ domain
    pfam13465
    Location:531 → 555
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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