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LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101807977, updated on 3-Aug-2024

Summary

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Gene symbol
LSM3
Gene description
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
See related
Ensembl:ENSFALG00000012644
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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See LSM3 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 12 NC_021684.1 (11525360..11529955)

Chromosome 12 - NC_021684.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 43 Neighboring gene XPC complex subunit, DNA damage recognition and repair factor Neighboring gene solute carrier family 6 member 6 Neighboring gene glutamate receptor interacting protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021684.1 Chromosome 12 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm3
Names
LSM3 homolog, U6 small nuclear RNA associated

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021684.1 Reference FicAlb1.5 Primary Assembly

    Range
    11525360..11529955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005053151.1 → XP_005053208.1  U6 snRNA-associated Sm-like protein LSm3

    See identical proteins and their annotated locations for XP_005053208.1

    UniProtKB/TrEMBL
    U3KDT8
    Related
    ENSFALP00000013192.1, ENSFALT00000013247.2
    Conserved Domains (1) summary
    cd01730
    Location:16 → 97
    LSm3; Like-Sm protein 3
Nucleotide Protein
Heading Accession and Version

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