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RBMS3 RNA binding motif single stranded interacting protein 3 [ Anas platyrhynchos (mallard) ]

Gene ID: 101795137, updated on 8-Mar-2024

Summary

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Gene symbol
RBMS3
Gene description
RNA binding motif single stranded interacting protein 3
Locus tag
Anapl_06245
See related
EnsemblRapid:ENSAPLG00030005777
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
26
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 2 NC_051773.1 (121846513..122540302, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 2 NC_040047.1 (41483397..42169806)

Chromosome 2 - NC_051773.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119715827 Neighboring gene uncharacterized LOC106016617 Neighboring gene uncharacterized LOC106016616 Neighboring gene uncharacterized LOC110352418 Neighboring gene uncharacterized LOC119716094 Neighboring gene 5-azacytidine induced 2 Neighboring gene C-X9-C motif containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(U) RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding motif, single-stranded-interacting protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051773.1 Reference ZJU1.0 Primary Assembly

    Range
    121846513..122540302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038175453.1 → XP_038031381.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A493SSQ3, A0A493T5U9
    Conserved Domains (3) summary
    TIGR01628
    Location:179 → 520
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12472
    Location:175 → 254
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cl17169
    Location:257 → 344
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_038175454.1 → XP_038031382.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A493SSQ3, A0A493T5U9
    Conserved Domains (3) summary
    TIGR01628
    Location:179 → 520
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12472
    Location:175 → 254
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cl17169
    Location:257 → 344
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_038175452.1 → XP_038031380.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A493SSQ3, A0A493T5U9
    Conserved Domains (3) summary
    TIGR01628
    Location:179 → 520
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12472
    Location:175 → 254
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cl17169
    Location:257 → 344
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_038175455.1 → XP_038031383.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A493T5U9
    Related
    ENSAPLP00030011793.1, ENSAPLT00030015513.1
    Conserved Domains (3) summary
    TIGR01628
    Location:178 → 519
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12472
    Location:174 → 253
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cl17169
    Location:256 → 343
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_038175451.1 → XP_038031379.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A493SSQ3, A0A493T5U9
    Conserved Domains (3) summary
    TIGR01628
    Location:179 → 520
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12472
    Location:175 → 254
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cl17169
    Location:257 → 344
    RRM_SF; RNA recognition motif (RRM) superfamily

  6. XM_038175461.1 → XP_038031389.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A493T5U9
    Conserved Domains (3) summary
    TIGR01628
    Location:121 → 462
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12472
    Location:117 → 196
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cl17169
    Location:199 → 286
    RRM_SF; RNA recognition motif (RRM) superfamily

  7. XM_038175459.1 → XP_038031387.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A493T5U9, U3IXR7
    Conserved Domains (3) summary
    TIGR01628
    Location:122 → 463
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12475
    Location:200 → 287
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:118 → 197
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)

  8. XM_038175458.1 → XP_038031386.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A493T5U9, U3IXR7
    Conserved Domains (3) summary
    TIGR01628
    Location:122 → 463
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12475
    Location:200 → 287
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:118 → 197
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)

  9. XM_038175457.1 → XP_038031385.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A493T5U9
    Conserved Domains (3) summary
    TIGR01628
    Location:125 → 466
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12475
    Location:203 → 290
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:121 → 200
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)

  10. XM_038175456.1 → XP_038031384.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A493T5U9
    Conserved Domains (3) summary
    TIGR01628
    Location:179 → 520
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12472
    Location:175 → 254
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cl17169
    Location:257 → 344
    RRM_SF; RNA recognition motif (RRM) superfamily

  11. XM_038175465.1 → XP_038031393.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X11

    UniProtKB/TrEMBL
    A0A8B9TKZ3
    Conserved Domains (3) summary
    TIGR01628
    Location:59 → 400
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12475
    Location:137 → 224
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:55 → 134
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)

  12. XM_038175464.1 → XP_038031392.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X10

    UniProtKB/TrEMBL
    A0A8B9TKZ3
    Related
    ENSAPLP00030011687.1, ENSAPLT00030015371.1
    Conserved Domains (3) summary
    TIGR01628
    Location:60 → 401
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12475
    Location:138 → 225
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:56 → 135
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)

  13. XM_038175460.1 → XP_038031388.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A493TF48
    Conserved Domains (2) summary
    cd12475
    Location:257 → 344
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:175 → 254
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)

  14. XM_038175462.1 → XP_038031390.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A493TF48
    Conserved Domains (2) summary
    cd12475
    Location:257 → 344
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:175 → 254
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)

  15. XM_038175463.1 → XP_038031391.1  RNA-binding motif, single-stranded-interacting protein 3 isoform X9

    UniProtKB/TrEMBL
    A0A493TF48
    Conserved Domains (2) summary
    cd12475
    Location:257 → 344
    RRM2_RBMS3; RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)
    cd12472
    Location:175 → 254
    RRM1_RBMS3; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding motif, single-stranded-interacting protein 3 (RBMS3)

RNA

  1. XR_005263781.1 RNA Sequence

Nucleotide Protein
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