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Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101726184, updated on 8-Mar-2024

Summary

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Gene symbol
Fyco1
Gene description
FYVE and coiled-coil domain autophagy adaptor 1
See related
Ensembl:ENSHGLG00000019426
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624730.1 (74923072..74982882)

NW_004624730.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110348852 Neighboring gene X-C motif chemokine receptor 1 Neighboring gene C-X-C motif chemokine receptor 6 Neighboring gene C-C motif chemokine receptor 9 Neighboring gene charged multivesicular body protein 1b-like Neighboring gene spermine synthase pseudogene Neighboring gene leucine zipper transcription factor like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624730 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in plus-end-directed vesicle transport along microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
FYVE and coiled-coil domain-containing protein 1
Names
FYVE and coiled-coil domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624730.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    74923072..74982882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021257172.1 → XP_021112831.1  FYVE and coiled-coil domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    G5ANN7
    Conserved Domains (3) summary
    cd15726
    Location:1138 → 1195
    FYVE_FYCO1; FYVE domain found in FYVE and coiled-coil domain-containing protein 1 (FYCO1) and similar proteins
    cl02689
    Location:49 → 135
    RUN; RUN domain
    cl25732
    Location:398 → 1098
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_004835035.3 → XP_004835092.1  FYVE and coiled-coil domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_004835092.1

    UniProtKB/TrEMBL
    G5ANN7
    Related
    ENSHGLP00000027324.1, ENSHGLT00000027566.1
    Conserved Domains (4) summary
    cd15726
    Location:1138 → 1195
    FYVE_FYCO1; FYVE domain found in FYVE and coiled-coil domain-containing protein 1 (FYCO1) and similar proteins
    pfam13897
    Location:1385 → 1430
    GOLD_2; Golgi-dynamics membrane-trafficking
    cl02689
    Location:49 → 135
    RUN; RUN domain
    cl25732
    Location:398 → 1115
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_021257162.1 → XP_021112821.1  FYVE and coiled-coil domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    G5ANN7
    Conserved Domains (4) summary
    cd15726
    Location:1138 → 1195
    FYVE_FYCO1; FYVE domain found in FYVE and coiled-coil domain-containing protein 1 (FYCO1) and similar proteins
    pfam13897
    Location:1385 → 1430
    GOLD_2; Golgi-dynamics membrane-trafficking
    cl02689
    Location:49 → 135
    RUN; RUN domain
    cl25732
    Location:398 → 1115
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_013072627.2 → XP_012928081.1  FYVE and coiled-coil domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_012928081.1

    UniProtKB/TrEMBL
    G5ANN7
    Conserved Domains (4) summary
    cd15726
    Location:1138 → 1195
    FYVE_FYCO1; FYVE domain found in FYVE and coiled-coil domain-containing protein 1 (FYCO1) and similar proteins
    pfam13897
    Location:1385 → 1430
    GOLD_2; Golgi-dynamics membrane-trafficking
    cl02689
    Location:49 → 135
    RUN; RUN domain
    cl25732
    Location:398 → 1115
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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