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Ttc39a tetratricopeptide repeat domain 39A [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101719366, updated on 8-Mar-2024

Summary

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Gene symbol
Ttc39a
Gene description
tetratricopeptide repeat domain 39A
See related
Ensembl:ENSHGLG00000001310
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Ttc39a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624859.1 (1760693..1804025)

NW_004624859.1Genomic Context describing neighboring genes Neighboring gene calreticulin-like Neighboring gene epidermal growth factor receptor pathway substrate 15 Neighboring gene cyclin-dependent kinase 1 pseudogene Neighboring gene ATP synthase F(0) complex subunit B1, mitochondrial pseudogene Neighboring gene ring finger protein 11 Neighboring gene protein PXR1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624859 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 39A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624859.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    1760693..1804025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004869265.3 → XP_004869322.1  tetratricopeptide repeat protein 39A isoform X1

    UniProtKB/TrEMBL
    G5C862
    Conserved Domains (2) summary
    pfam10300
    Location:32 → 486
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:480 → 546
    TPR_12; Tetratricopeptide repeat

  2. XM_004869269.3 → XP_004869326.1  tetratricopeptide repeat protein 39A isoform X4

    UniProtKB/TrEMBL
    G5C862
    Conserved Domains (2) summary
    pfam10300
    Location:18 → 451
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:445 → 511
    TPR_12; Tetratricopeptide repeat

  3. XM_004869266.3 → XP_004869323.1  tetratricopeptide repeat protein 39A isoform X2

    UniProtKB/TrEMBL
    G5C862
    Related
    ENSHGLP00000001720.1, ENSHGLT00000001765.1
    Conserved Domains (2) summary
    pfam10300
    Location:27 → 481
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:475 → 541
    TPR_12; Tetratricopeptide repeat

  4. XM_004869270.3 → XP_004869327.1  tetratricopeptide repeat protein 39A isoform X5

    UniProtKB/TrEMBL
    G5C862
    Conserved Domains (2) summary
    pfam10300
    Location:15 → 446
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:440 → 506
    TPR_12; Tetratricopeptide repeat

  5. XM_004869268.3 → XP_004869325.1  tetratricopeptide repeat protein 39A isoform X3

    See identical proteins and their annotated locations for XP_004869325.1

    UniProtKB/TrEMBL
    G5C862
    Conserved Domains (2) summary
    pfam10300
    Location:1 → 455
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:449 → 515
    TPR_12; Tetratricopeptide repeat

  6. XM_004869267.3 → XP_004869324.1  tetratricopeptide repeat protein 39A isoform X3

    See identical proteins and their annotated locations for XP_004869324.1

    UniProtKB/TrEMBL
    G5C862
    Related
    ENSHGLP00000001721.1, ENSHGLT00000001766.1
    Conserved Domains (2) summary
    pfam10300
    Location:1 → 455
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:449 → 515
    TPR_12; Tetratricopeptide repeat

  7. XM_021247942.1 → XP_021103601.1  tetratricopeptide repeat protein 39A isoform X6

    UniProtKB/TrEMBL
    G5C862
    Conserved Domains (2) summary
    pfam10300
    Location:1 → 429
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:414 → 489
    TPR_12; Tetratricopeptide repeat

  8. XM_004869271.3 → XP_004869328.1  tetratricopeptide repeat protein 39A isoform X6

    UniProtKB/TrEMBL
    G5C862
    Conserved Domains (2) summary
    pfam10300
    Location:1 → 429
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:414 → 489
    TPR_12; Tetratricopeptide repeat

  9. XM_021247944.1 → XP_021103603.1  tetratricopeptide repeat protein 39A isoform X6

    UniProtKB/TrEMBL
    G5C862
    Conserved Domains (2) summary
    pfam10300
    Location:1 → 429
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:414 → 489
    TPR_12; Tetratricopeptide repeat

  10. XM_021247943.1 → XP_021103602.1  tetratricopeptide repeat protein 39A isoform X6

    UniProtKB/TrEMBL
    G5C862
    Conserved Domains (2) summary
    pfam10300
    Location:1 → 429
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:414 → 489
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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