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Lrit1 leucine rich repeat, Ig-like and transmembrane domains 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101706242, updated on 8-Mar-2024

Summary

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Gene symbol
Lrit1
Gene description
leucine rich repeat, Ig-like and transmembrane domains 1
Locus tag
GW7_04259
See related
Ensembl:ENSHGLG00000011452
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624841.1 (2790299..2799447)

NW_004624841.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-fold modifier 1 pseudogene Neighboring gene retinal G protein coupled receptor Neighboring gene uncharacterized LOC110346289 Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624841 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1
Names
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624841.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    2790299..2799447
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004867734.2 → XP_004867791.1  leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1

    Related
    ENSHGLP00000016015.1, ENSHGLT00000016184.1
    Conserved Domains (7) summary
    smart00060
    Location:427 → 497
    FN3; Fibronectin type 3 domain
    smart00410
    Location:267 → 345
    IG_like; Immunoglobulin like
    sd00031
    Location:63 → 84
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:131 → 171
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:117 → 167
    LRR_8; Leucine rich repeat
    cl11960
    Location:255 → 345
    Ig; Immunoglobulin domain
    cl15307
    Location:201 → 240
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
Heading Accession and Version

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