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Sh3rf1 SH3 domain containing ring finger 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101702774, updated on 8-Mar-2024

Summary

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Gene symbol
Sh3rf1
Gene description
SH3 domain containing ring finger 1
See related
Ensembl:ENSHGLG00000016975
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624769.1 (668175..834863, complement)

NW_004624769.1Genomic Context describing neighboring genes Neighboring gene palladin, cytoskeletal associated protein Neighboring gene uncharacterized LOC110350778 Neighboring gene carbonyl reductase 4 Neighboring gene actin-related protein 2/3 complex subunit 1A pseudogene Neighboring gene enkurin-like Neighboring gene NIMA related kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624769 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase SH3RF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624769.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    668175..834863 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021264926.1 → XP_021120585.1  E3 ubiquitin-protein ligase SH3RF1 isoform X1

    UniProtKB/TrEMBL
    G5BC19
    Conserved Domains (6) summary
    cd11785
    Location:834 → 888
    SH3_SH3RF_C; C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains
    cd11926
    Location:450 → 504
    SH3_SH3RF1_3; Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase
    cd11930
    Location:200 → 254
    SH3_SH3RF1_2; Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
    cd16748
    Location:8 → 55
    RING-HC_SH3RF1; RING finger, HC subclass, found in SH3 domain-containing RING finger protein 1 (SH3RF1) and similar proteins
    cl17036
    Location:137 → 190
    SH3; Src Homology 3 domain superfamily
    cl26464
    Location:597 → 849
    Atrophin-1; Atrophin-1 family

  2. XM_004852920.2 → XP_004852977.1  E3 ubiquitin-protein ligase SH3RF1 isoform X2

    UniProtKB/TrEMBL
    G5BC19
    Related
    ENSHGLP00000023809.1, ENSHGLT00000024027.1
    Conserved Domains (5) summary
    cd11785
    Location:833 → 887
    SH3_SH3RF_C; C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains
    cd11926
    Location:450 → 504
    SH3_SH3RF1_3; Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase
    cd11930
    Location:200 → 254
    SH3_SH3RF1_2; Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
    cd00162
    Location:11 → 56
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cl17036
    Location:137 → 190
    SH3; Src Homology 3 domain superfamily

  3. XM_004852919.2 → XP_004852976.1  E3 ubiquitin-protein ligase SH3RF1 isoform X1

    UniProtKB/TrEMBL
    G5BC19
    Conserved Domains (6) summary
    cd11785
    Location:834 → 888
    SH3_SH3RF_C; C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains
    cd11926
    Location:450 → 504
    SH3_SH3RF1_3; Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase
    cd11930
    Location:200 → 254
    SH3_SH3RF1_2; Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase
    cd16748
    Location:8 → 55
    RING-HC_SH3RF1; RING finger, HC subclass, found in SH3 domain-containing RING finger protein 1 (SH3RF1) and similar proteins
    cl17036
    Location:137 → 190
    SH3; Src Homology 3 domain superfamily
    cl26464
    Location:597 → 849
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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