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ITGB4 integrin subunit beta 4 [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101675802, updated on 8-Mar-2024

Summary

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Gene symbol
ITGB4
Gene description
integrin subunit beta 4
See related
Ensembl:ENSMPUG00000013821
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
41
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421504.1 (5387597..5418111, complement)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569166.1 (5410009..5438863, complement)

NW_025421504.1Genomic Context describing neighboring genes Neighboring gene histone H3.3A Neighboring gene galactokinase 1 Neighboring gene U6 spliceosomal RNA Neighboring gene SAP30 binding protein Neighboring gene RecQ like helicase 5 Neighboring gene small integral membrane protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. Camp JV, et al. PLoS One, 2012. PMID 22606336, Free PMC Article
  2. Sequencing, annotation, and characterization of the influenza ferret infectome. León AJ, et al. J Virol, 2013 Feb. PMID 23236062, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421504.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    5387597..5418111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045085904.1 → XP_044941839.1  integrin beta-4 isoform X2

    UniProtKB/TrEMBL
    A0A8U0V6G4
    Conserved Domains (3) summary
    smart00237
    Location:991 → 1085
    Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
    cd00063
    Location:1582 → 1672
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl00057
    Location:38 → 455
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  2. XM_045085903.1 → XP_044941838.1  integrin beta-4 isoform X1

    UniProtKB/TrEMBL
    A0A8U0SFP0
    Conserved Domains (3) summary
    smart00237
    Location:992 → 1086
    Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
    cd00063
    Location:1583 → 1673
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl00057
    Location:38 → 455
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  3. XM_045085905.1 → XP_044941840.1  integrin beta-4 isoform X3

    UniProtKB/TrEMBL
    A0A8U0SFD8
    Conserved Domains (3) summary
    smart00237
    Location:992 → 1086
    Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
    cd00063
    Location:1531 → 1621
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl00057
    Location:38 → 455
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  4. XM_045085907.1 → XP_044941842.1  integrin beta-4 isoform X5

    UniProtKB/TrEMBL
    M3YQV9
    Conserved Domains (6) summary
    smart00237
    Location:991 → 1085
    Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
    cd00063
    Location:1509 → 1599
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:1623 → 1708
    fn3; Fibronectin type III domain
    pfam07965
    Location:628 → 708
    Integrin_B_tail; Integrin beta tail domain
    pfam18372
    Location:459 → 487
    I-EGF_1; Integrin beta epidermal growth factor like domain 1
    cl00057
    Location:38 → 455
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  5. XM_045085906.1 → XP_044941841.1  integrin beta-4 isoform X4

    UniProtKB/TrEMBL
    A0A8U0SFD7
    Conserved Domains (6) summary
    smart00237
    Location:992 → 1086
    Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
    cd00063
    Location:1510 → 1600
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:1624 → 1709
    fn3; Fibronectin type III domain
    pfam07965
    Location:628 → 709
    Integrin_B_tail; Integrin beta tail domain
    pfam18372
    Location:459 → 487
    I-EGF_1; Integrin beta epidermal growth factor like domain 1
    cl00057
    Location:38 → 455
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  6. XM_045085909.1 → XP_044941844.1  integrin beta-4 isoform X7

    UniProtKB/TrEMBL
    A0A8U0V8K4
    Conserved Domains (6) summary
    smart00237
    Location:991 → 1085
    Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
    cd00063
    Location:1457 → 1547
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:1571 → 1656
    fn3; Fibronectin type III domain
    pfam07965
    Location:628 → 708
    Integrin_B_tail; Integrin beta tail domain
    pfam18372
    Location:459 → 487
    I-EGF_1; Integrin beta epidermal growth factor like domain 1
    cl00057
    Location:38 → 455
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

  7. XM_045085908.1 → XP_044941843.1  integrin beta-4 isoform X6

    UniProtKB/TrEMBL
    A0A8U0SFA3
    Conserved Domains (6) summary
    smart00237
    Location:992 → 1086
    Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
    cd00063
    Location:1458 → 1548
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:1572 → 1657
    fn3; Fibronectin type III domain
    pfam07965
    Location:628 → 709
    Integrin_B_tail; Integrin beta tail domain
    pfam18372
    Location:459 → 487
    I-EGF_1; Integrin beta epidermal growth factor like domain 1
    cl00057
    Location:38 → 455
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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