U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SUPT5H SPT5 homolog, DSIF elongation factor subunit [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101640702, updated on 20-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
SUPT5H
Gene description
SPT5 homolog, DSIF elongation factor subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022104553.1 (31165256..31182012, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558746.1 (5428048..5444336)

NW_022104553.1Genomic Context describing neighboring genes Neighboring gene delta like canonical Notch ligand 3 Neighboring gene uncharacterized LOC123521993 Neighboring gene translocase of inner mitochondrial membrane 50 Neighboring gene uncharacterized LOC123522017 Neighboring gene ribosomal protein S16

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation-coupled chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DSIF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription elongation factor SPT5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022104553.1 Reference ASM31398v2 Primary Assembly

    Range
    31165256..31182012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004710319.2 → XP_004710376.1  transcription elongation factor SPT5 isoform X2

    Conserved Domains (5) summary
    cd09888
    Location:171 → 258
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    COG5164
    Location:326 → 954
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:269 → 306
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06086
    Location:1017 → 1073
    KOW_Spt5_6; KOW domain of Spt5, repeat 6
    pfam11942
    Location:72 → 164
    Spt5_N; Spt5 transcription elongation factor, acidic N-terminal

  2. XM_004710318.4 → XP_004710375.1  transcription elongation factor SPT5 isoform X1

    Conserved Domains (5) summary
    cd09888
    Location:175 → 262
    NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
    COG5164
    Location:330 → 958
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:273 → 310
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06086
    Location:1021 → 1077
    KOW_Spt5_6; KOW domain of Spt5, repeat 6
    pfam11942
    Location:72 → 168
    Spt5_N; Spt5 transcription elongation factor, acidic N-terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.