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Adarb1 adenosine deaminase RNA specific B1 [ Octodon degus (degu) ]

Gene ID: 101571844, updated on 8-Mar-2024

Summary

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Gene symbol
Adarb1
Gene description
adenosine deaminase RNA specific B1
See related
Ensembl:ENSODEG00000014508
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524621.1 (6571542..6666513)

NW_004524621.1Genomic Context describing neighboring genes Neighboring gene SLX9 ribosome biogenesis factor Neighboring gene peptidyl-prolyl cis-trans isomerase A pseudogene Neighboring gene protein O-fucosyltransferase 2 Neighboring gene collagen type XVIII alpha 1 chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524621 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA-specific adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in adenosine to inosine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
double-stranded RNA-specific editase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524621.1 Reference OctDeg1.0 Primary Assembly

    Range
    6571542..6666513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023715913.1 → XP_023571681.1  double-stranded RNA-specific editase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P6EHZ9
    Conserved Domains (2) summary
    smart00552
    Location:322 → 707
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd00048
    Location:79 → 142
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...

  2. XM_023715912.1 → XP_023571680.1  double-stranded RNA-specific editase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P6EHZ9
    Conserved Domains (2) summary
    smart00552
    Location:322 → 707
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd00048
    Location:79 → 142
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...

  3. XM_004631805.3 → XP_004631862.1  double-stranded RNA-specific editase 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P3F8L9
    Conserved Domains (2) summary
    smart00552
    Location:322 → 698
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd00048
    Location:79 → 142
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...

  4. XM_023715916.1 → XP_023571684.1  double-stranded RNA-specific editase 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P6EH71
    Related
    ENSODEP00000019654.1, ENSODET00000019901.1
    Conserved Domains (2) summary
    smart00552
    Location:322 → 637
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd00048
    Location:79 → 142
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...

  5. XM_023715914.1 → XP_023571682.1  double-stranded RNA-specific editase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P6EHZ9
    Conserved Domains (2) summary
    smart00552
    Location:322 → 707
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd00048
    Location:79 → 142
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...

  6. XM_023715915.1 → XP_023571683.1  double-stranded RNA-specific editase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P6EHZ9
    Conserved Domains (2) summary
    smart00552
    Location:322 → 707
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd00048
    Location:79 → 142
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...

RNA

  1. XR_002821257.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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